From: Variation in plastid genomes in the gynodioecious species Silene vulgaris
Genome position | Edit rate | Genome position | Edit rate | Ambo. | Spiro. | Aegilops | Arab. | Hevea | Nicot. | Vigna | Cucumis | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Gene position | Effect/Notes | KRA | KOV | ||||||||||
rps 16 intron | 5004 | 69% | 4996 | 30% | NA | NA | NA | NA | C | NA | NA | NA | |
rps 16 intron | 5325 | 93% | 5317 | 93% | T | C | Edit | T | C | C? | C? | C? | |
atpAeU914SL | TCA (S) = > TTA (L) | 10,003 | 96% | 10,000 | 96% | Edit | T | T | T | T | T | T | T |
intergenic | 12,532 | 92% | 12,531 | 93% | NA | NA | NA | NA | NA | NA | NA | NA | |
intergenic | 13,336 | 50% | 13,336 | 72% | NA | NA | NA | NA | NA | NA | NA | NA | |
rps2eU248SL | TCA (S) = > TTA (L) | 14,920 | 98% | 14,920 | 97% | C | T | T | T | Edit | C | Edit | Edit |
rpoC2eU2968HY | CAT (H) = > TAT (Y) | 16,608 | 70% | 16,586 | 85% | C | T | C | T | C | C | C | C |
rpoBeU566SL | TCG (S) = > TTG (L) | 25,178 | 52% | 25,156 | 80% | C | T | Edit | T | T | T | Edit | Edit |
rpoBeU551SL | TCA (S) = > TTA (L) | 25,193 | 49% | 25,171 | 76% | Edit | T | Edit | Edit | Edit | Edit | Edit | Edit |
rpoBeU473SL | TCA (S) = > TTA (L) | 25,271 | 78% | 25,249 | 83% | Edit | Edit | Edit | T | T | Edit | T | T |
psbZeU50SL | TCA (S) = > TTA (L) | 34,009 | 0 | 33,958 | 6% | C | Edit | C | Edit | C | T | T | C |
rps14eU80SL | TCA (S) = > TTA (L) | 35,133 | 98% | 35,071 | 96% | T | T | T | Edit | Edit | Edit | Edit | T |
ndhJeU160QX | CAA(Q) = > TAA(Stop) | 47,529 | 13% | 47,486 | 8% | C | C | C | C | C | C | C | C |
intergenic | 47,740 | 32% | 47,697 | 45% | NA | NA | NA | NA | NA | NA | NA | NA | |
ndhKeU65SL | TCA (S) = > TTA (L) | 48,408 | 65% | 48,365 | 77% | Edit | T | Edit | T | Edit | T | T | Edit |
intergenic | 49,285 | 23% | 49,243 | 43% | NA | NA | NA | NA | NA | NA | NA | NA | |
accDeU1337PL | CCA (P) = > CTA (L) | 57,221 | 95% | 57,185 | 96% | Edit | T | T | C)b | T | T | T | T |
psaIeU85HY | CAT (H) = > TAT (Y) | 57,642 | 71% | 57,601 | 82% | Edit | T | T | C | T | C | Edit | Edit |
psbLeU2TM | ACG(T) = > ATG (Start) | 62,667 | 96% | 62,630 | 98% | Edit | T | T | T | T | Edit | T | T |
petLeU5PL | CCT (P) = > CTT (L) | 64,268 | 86% | 64,236 | 90% | Edit | T | T | Edit | Edit | T | Edit | T |
intergenic | 64,933 | 83% | 64,902 | 86% | NA | NA | NA | NA | NA | NA | NA | NA | |
clpPeU559HY | CAT (H) = > TAT (Y) | 68,351 | 97% | 68,321 | 98% | Edit | T | T | Edit | Edit | T | Edit | Edit |
petBeU12VV | Silent GTC (V) = > GTT (V) | 73,958 | 32% | 73,935 | 56% | A | C | A | T | C | A | T | G |
petBeU418RW | CGG (R) = > TGG (W) | 74,364 | 97% | 74,341 | 93% | Edit | T | T | T | T | T | T | Edit |
rpoAeU200SF | TCT (S) = > TTT (F) | 77,018 | 93% | 76,983 | 89% | Edit | Edit | T | Edit | Edit | C | Edit | C |
ndhBeU1481PL | CCA (P) = > CTA (L) | 91,996 | 89% | 91,961 | 80% | Edit | Edit | Edit | Edit | Edit | Edit | Edit | Edit |
ndhBeU836SL | TCA (S) = > TTA (L) | 92,641 | 90% | 92,606 | 88% | T | Edit | Edit | Edit | C | Edit | Edit | C |
ndhBeU830SL | TCA (S) = > TTA (L) | 92,647 | 88% | 92,612 | 84% | Edit | Edit | Edit | Edit | Edit | Edit | Edit | Edit |
ndhBeU746SF | TCT (S) = > TTT (F) | 93,399 | 74% | 93,364 | 80% | T | T | T | Edit | Edit | Edit | Edit | C |
ndhBeU737PL | CCA (P) = > CTA (L) | 93,408 | 87% | 93,373 | 81% | Edit | Edit | Edit | T | T | Edit | Edit | Edit |
ndhBeU586HY | CAT (H) = > TAT (Y) | 93,559 | 60% | 93,524 | 56% | Edit | Edit | Edit | Edit | Edit | Edit | Edit | Edit |
ndhBeU542TM | ACG (T) = > ATG (M) | 93,603 | 30% | 93,568 | 45% | Edit | Edit | T | T | Edit | T | Edit | Edit |
ndhBeU467PL | CCA (P) = > CTA (L) | 93,678 | 73% | 93,643 | 79% | Edit | Edit | Edit | Edit | Edit | Edit | T | Edit |
ndhBeU149SL | TCA (S) = > TTA (L) | 93,996 | 58% | 93,961 | 69% | Edit | Edit | Edit | Edit | Edit | Edit | Edit | Edit |
ndhDeU1298SL | TCA (S) = > TTA (L) | 113,839 | 96% | 113,810 | 96% | T | T | T | T | T | C | T | T |
ndhDeU887PL | CCC (P) = > CTC (L) | 114,250 | 84% | 114,221 | 87% | T | T | T | Edit | Edit | T | T | Edit |
ndhDeU383HY | CAT (H) = > TAT (Y) | 114,754 | 78% | 114,722 | 87% | Edit | T | T | Edit | T | Edit | Edit | Edit |
ndhDeU2TM | ACG(T) = > ATG (Start) | 115,135 | 13% | 115,103 | 16% | Edit | Edit | T | Edit | T | Edit | Edit | Edit |
ndhGeU50TI | ACA (T) = > ATA (I) | 116,860 | 78% | 116,828 | 86% | C | T | T | Edit | T | C)c | C)d | Edit |
ndhAeU1073SF | TCC (S) = > TTC (F) | 117,937 | 83% | 117,905 | 75% | Edit | Edit | Edit | T | T | Edit | Edit | T |
ndhAeU961PS | CCT (P) = > TCT (S) | 118,049 | 74% | 118,017 | 83% | Edit | Edit | T | T | Edit | Edit | T | T |
ndhAeU566SL | TCA (S) = > TTA (L) | 118,444 | 6% | 118,412 | 21% | Edit | Edit | Edit | T | Edit | T | T | Edit |
ndhAeU341SL | TCA (S) = > TTA (L) | 119,692 | 89% | 119,660 | 73% | T | T | T | Edit | C | Edit | Edit | Edit |
ndhHeU303II | Silent ATC (I) = > ATT (I) | 120,913 | 29% | 120,881 | 7% | C | C | T | C | C | C | C | C |
Editing below threshold)a | |||||||||||||
psaIeU82LF | CTT (L) = > TTT (F) | 57,639 | 5% | 57,598 | 4% | C | C | C | C | C | C | C | C |
intergenic | 57,712 | 9% | 57,671 | 15% | NA | NA | NA | NA | NA | NA | NA | NA | |
intergenic | 57,717 | 7% | 57,676 | 12% | NA | NA | NA | NA | NA | NA | NA | NA | |
intergenic | 57,740 | 4% | 57,699 | 9% | NA | NA | NA | NA | NA | NA | NA | NA | |
intergenic | 57,745 | 5% | 57,704 | 9% | NA | NA | NA | NA | NA | NA | NA | NA | |
intergenic | 57,892 | 4% | 57,854 | 8% | NA | NA | NA | NA | NA | NA | NA | NA | |
intergenic | 57,897 | 2% | 57,859 | 13% | NA | NA | NA | NA | NA | NA | NA | NA |