Skip to main content

Table 1 Differential expression of transcripts of interest (FDR < 0.05) during experimental desiccation-rehydration cycle in H. caudiculatum and H. dentatum fronds. The table shows the pairwise comparison of the increase/decrease abundance of transcripts between the transition of fronds from one to another hydration state, namely full hydrated (FH), dehydrated (DH, and rehydrated (RH). Gene identities were obtained with GO-enrichment by Panther Classification System V11.0. The level of regulation of each gene was estimated by value of the logarithm of fold change (logFC, on brackets) above and below 1.0 and − 1.0, for up and down regulation, respectively

From: A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference

Species

Abundance

Pairwise comparison between hydration states

FH x DH

DH x RH

FH x RH

Annotated Genes (logFC)

Annotated Genes (logFC)

Annotated Genes (logFC)

H. CAUDICULATUM

Increase

AKR1(2.2); AKR2(1.8); ALKR3(1.9); ALKR4(1.8); ALL12(4.8); AMT12(3.4); ATPA(3.0); ATPB(5.0); ATPF(3.0);ATPH(3.0); ATPI(3.0); CEMA(5.0); CHLB(3.0); CLPP(5.0); BAM1(1.6); BGL25(5.0); BURPG(1.8); CADH(2.5); CB2(9.6); COMT1(1.9); COR2(3.1); CYB6(5.0); CYF(5.0); DOG1(2.1); ERF17(1.9); ERF55(2.2); ERF80(2.7); FAD4(1.9); FRI3(3.0); GDPD1(2.8); GSTF3(2.3); GSTFA(2.3); GSTL2(2.5); GSTUH(3.0); GSTUJ(3.9); GSTUK(2.6); GSTUS(1.9); GSTX2(2.1); GSTX4(4.4); H2A7(1.8); HACL(1.9); HBL(2.7); HSP7C(2.0); HST(2.4); IAA17(2.1); IN21B(3.2); IQD1(2.0); MASY(3.4); MPCP3(3.0); NAC68(3.5); NADB(2.6); NDHJ(2.3); NDHK(2.3); NIR(2,8); NRT24(7.0); NRT31(3.2); NU3C(2.3); OPR11(2.3); OPR5(1.8); PCKA(3.1); PETD(5.0); PLA5(2.2); PMA4(1.8); PSAA(1.7); PSBA(3.0); PSBB(5.0); PSBE(5.0); PSBH(5.0); PSBK(3.0); PBSN(5.0); PUMP4(4.5); QORL(2.0); RA213(2.1); RBL(5.0); RUBREDOXIN(2.3); SAU72(1.8); SRC2(3.6); U85A1(2.2); U85A2(2.4); U85A3(3.7); U85A4(2.9); U85A7(1.9);UB6A1(2.3); WUN1(3.0); YAA4(2.0); YCF2(3.0); YCF3(2.3); YCF4(5.0)

ASR2(4.2); AXS1(2.4); CB23(3.9); CFI3(2.5); CHSY(4.0); EXTENSIN1(10.7); GDL10(5.6); GRP(9.3); MYR1(2.9); PALY(4.0); PGL2(3.6); PME53(5.2); PPO(2.9); PRP1(11.1); SHT(2.5); U85A2(2.8)

AAP4(2.2); AB2C(1.9); ACCD(5.5); AKR1(2.4); ALL12(3.7); ARP(2.1); ASR1(2.7); ATPA(3.5); ATPB(5.8); ATPE(5.8); ATPF(3.5); ATPH(3.5); ATPI(3.5); BAM1(2.2); BGL25(4.7); BURPG(1.8); CB2(9.7); CEMA(5.5); CHLB(3.5); CLPP(5.5); COX2(2.5); COX3(2.6); CSE(2.9); CYB(2.2); CYB6(5.5); CYF(5.5); DIR1(2.1); DOG1(2.5); DS22(1.8); ERF17(2.2); ERF80(2.7); FAD4(2.4); FRI3(3.1); GRP(3.5); GSTFA(2.6); GSTL2(3.0); GSTUH(2.1); GSTUJ(4.0); GSTX4(3.6); IFRH(2.2); IN21B(2.6); MASY(3.0); MECR(3.9); MFT(2.1); MI25(2.6); MPCP3(2.4); NDHJ(2.4); NDHK(2.4); NRT24(3.1); NU3C(2.4); NU3M(2.1); OPR11(2.4); OPR5(2.2); PCKA(3.5); PETD(); PRP1(1.9); PSAA(2.1); PSAB(2.0); PSBA(3.5); PSBB(5.8); PSBE(5.8); PSBH(5.8); PSBK(3.5); PSBN(5.8); QORL(2.0), RBL(5.8); RCI2A(1.9); RK14(5.8); RR11(5.8); RR14(2.1); RR19(5.8); RR3(5.8); RR4(2.4); RUBREDOXIN(2.8); SRC2(4.5); TCMO(5.3); TET8(1.9); YCF2(3.5); YCF3(2.4); YCF4(5.8)

Decrease

AATPD(-2.6); ALF1(-2.1); ARF1(-3.2); ASPG2(-1.9); ASR2(-5.7); AXS1(-3.1); BCA2(-1.9); CA4(-2.0); CATA3(-2.7); CB12(-2.6); CB121(-1.9); CB13(-1.8); CB2(-3.1); CB21(-3.7); CB23(-5.7); CB4A(-2.7); CB4B(-2.6); CB5(-2.2); CCH(-2.3); CFI(-1.7); CFI3(-3.2); CHSY(-5.2); CRD1(-1.9); CRSP(-6.9); CUT1A(-2.2); D5FAD(-2.2); DFRA(-2.6); DHAR2(-11.7); DRPE(-2.2); EXTENSIN1(-11.0); FTRC(-1.8); GDL10(-7.2); GDL61(-1.8); GPX7(-2.1); GRP(); GRS17(-3.7); GSA(-2.1); GSTX4(-1.7); LEA4(-X.X); LTPG2(-2.0); MYR1(-4.1); NLTP5(-2.4); NLTP6(-2.3); P2SAF(-1.7); PADC(-6.7); PALY(-4.7); PB27A(-2.1); PER29(-2.5); PGL2(-4.1); PPO(-3.4); PRE2E2(-2.1); PRX2B(-3.6); PSAH(-1.7); PSAL(-1.8); PSBO(-6.7); PSBP(-1.9); PSBQ2(-2.1); PSBY(-1.8); PSBX(-3.5); SSG1(-2.2); TLPH(-4.4); U85A1(-2.6);U85A2(-5.0)

ADT1(-3.1); ALKR4(-2.3); AMT12(-2.8); COMT1(-2.1); HBL(-2.8); HST(-1.5); NAC68(-3,5); NIR(-3.1); NRT24(-3.9); NRT31(-2.5); PLA5(-2.1); PUMP4(-2.7); TCMO(-2.6); U85A2(-3.0); U85A3(-2.5); U85A4(-2.3)

AATPD(-3.3); CATA3(-1.9); CB12(-2.5); CB2(-2.2); CB21(-2.5); CB23(-4.8); CB4A(-2.2); CB5(-2.1); CP74(-2.0); CRSP(-5.8); CUT1A(-2.2); DHAR2(-16.1); DRPE(-2.6); GALDH(-1.9); GRS17(-3.1); GSA(-2.0); HSP12(-2.0); OSL3(-3.6); PADC(-2.4); PAP14(-2.0); POR(-3.6); PR2E2(-2.0); PRX2B(-3.0); PSBO(-4.8); PSBQ2(-1.9); SDC3(-1.8); U85A2(-2.3); U85A3(-2.1)

H. DENTATUM

Increase

AAP4(2.4); ALDH(2.2); ALKR3(1.9); ALL12(2.2); ASR1(2.1); ATPA(2.9); ATPAM(2.3); ATPH(3.4); ATPI(3.4); CATA2(2.1); CHLB(2.9); DRE2A(2.2); EF1A(3.2); ELI6(2.5); ERF17(3.1); FRI3(2.4); GSTU4(2.7); GSTUH(2.1); GSTUK(1.9); GSTXA(2.1); HBL2(2.0); HIP26(2.2); LTP2(2.5); MASY(1.8); OMT1(2.7); OPR7(2.7); PCKA(3.1); PIR3(2.0); PSAA(2.5); PSAB(2.3); PSBA(2.9); PSBK(2.9); RA213(2.8); U85A1(2.8); UBI1P(2.4); UBIQP(2.9); ZB14(2.9)

ASR1(3.4); ATCA7(2.1); BURPG(2.6); CYSEP(3.2); EF1A(5.9); ERF18(2.3); FT(2.2); GDPD1(4.1); HIP26(2.6); ISCAP(2.6); LACP(6.9); PBP1(2.6); PER29(2.0); RCI2A(2.0); SRP(2.8)

CYSTM(9.1); DRE2A(3.1); EF1A(2.3); ELI6(3.0); ERF17(2.9); GDPD1(2.2); HIP26(2.3); RA213(2.1); TGA21(2.2); UBIQP(4.0)

Decrease

ASR1(-3.0); ASR2(-2.0); ATCA7(-2.5); BURPG(3.8)-; CB23(-1.9); CYSEP(-3.7); DHAR2(-1.8); DIR5(-2.0); EF1A(-6.3); ERF18(-2.1); GDPD1(-1.9); HIP26(-1.9); ISCAP(-2.8); LACP(-4.5); LIN1(-7.2); NLTP(-2.0); PBP1(-2.0); PER29(-3.1); PME53(-2.6); PSBO(-1.9); RCI2A(-1.9); REHY(-2.0); SRP(-2.0); YLS9(-2.0)

ALKR3(-2.8); ALL12(-3.0); ASR1(-2.0); ATPA(-1.8); ATPAM(-1.8); ATPH(-3.0); ATPI(-3.0); CALM(-2.0); CHLB(-2.9); CHS7(-4.6); CLH1(-2.8); DBR2(-2.2); FRI3(-2.2); GL52(-3.1), GL82(-2.7); GSTU4(-3.8); GSTUH(-3.3); GSTUK(-1.9); GSTXA(-3.2), HBL2(-2.0); IN21B(-1.9); LOX2(-1.9); OPR5(-1.9); OPR7(-2.4); PCKA(-2.5); PIP28(-2.3); POLX(-2.0); PSAA(-2.6); PSAB(-2.3); PSBA(-2.9); PSBK(-2.9); PSBS(-2.1); U85A1(-2.2); ZB14(-2.9)

CHS7(-4.2); CLH1(-2.6); DIR(-2.2); GL52(-2.4); GSTFA(-2.0); GSTXC(-3.5); PME53(-2.5)