Genome-wide association mapping revealed syntenic loci QFhb-4AL and QFhb-5DL for Fusarium head blight resistance in common wheat (Triticum aestivum L.)

Table. 3 Candidate genes for SNPs significantly associated with FHB resistance

Marker^a	Chr^b	Position^c (cM)	Adjacent T. aestivum gene^d	Predicted function^e	Identity (%)	Orthologous gene
GENE-0293_154	1B	549.47	–	–	–
BS00011469_51	4A	621.85	TraesCS4A02G341700	PTI1-like tyrosine-protein kinase	100	LOC109767070
Excalibur_c22724_85 Kukri_c24695_273 Kukri_c1073_91	4A	622.20	TraesCS4A02G507700LC	protein FAR1-RELATED SEQUENCE 6-like	96.62	LOC109763821
Excalibur_c687_961 Excalibur_c687_907 Excalibur_c687_886	4A	622.24	TraesCS4A02G342500	putative receptor protein kinase ZmPK1	99.25	TRIUR3_00921
BobWhite_c13030_406	5D	546.09	TraesCS5D02G529700	uncharacterized protein	100	LOC109743624
BS00079676_51 RAC875_c13169_459 D_GA8KES401AL4GG_122	5D	546.65	TraesCS5D01G530300	putative RNA-binding protein Luc7-like 2	100	LOC109763817
wsnp_JD_c4438_5568170 wsnp_JD_c4438_5567972 wsnp_JD_c4438_5567834 BobWhite_c4438_162 IACX10520 BS00088587_51	5D	546.69	TraesCS5D02G530600	putative receptor protein kinase ZmPK1	100	LOC109763820
D_GDS7LZN01CBWNE_99 Kukri_c5528_603	5D	546.70	TraesCS5D02G530700	probable ion channel CASTOR	100	LOC109763818
Excalibur_c42190_383 Excalibur_c28592_377 Excalibur_c28592_173 Excalibur_c14043_548	5D	546.91	TraesCS5D02G531200	PTI1-like tyrosine-protein kinase	100	LOC109767070
CAP8_c145_89 wsnp_CAP11_c209_198467 BS00011794_51	5D	547.30	TraesCS5D02G532100	uncharacterized protein	99	LOC109767042
BobWhite_c22875_239	7A	661.30	TraesCS7A02G464900	probable polyamine transporter At3g13620	98.73	LOC109739139

^a Markers were detected at the threshold -log10 (P) = 3.0
^b Chr, Chromosome
^c Physical positions of SNP markers based on wheat genome sequences from the International Wheat Genome Sequencing Consortium (IWGSC, http://www.wheatgenome.org/)
^d T. aestivum gene transcripts and their domains were explored in Ensembl (using the transcript table link)
^e The sequences of T.aestivum gene were blasted in the NCBI (http://www.ncbi.nlm.nih.gov/), databases to identify putative gene functions

ISSN: 1471-2229