Genome-wide association mapping revealed syntenic loci QFhb-4AL and QFhb-5DL for Fusarium head blight resistance in common wheat (Triticum aestivum L.)

Hu, Wenjing; Gao, Derong; Wu, Hongya; Liu, Jian; Zhang, Chunmei; Wang, Junchan; Jiang, Zhengning; Liu, Yeyu; Li, Dongsheng; Zhang, Yong; Lu, Chengbin

doi:10.1186/s12870-019-2177-0

Table. 1 FHB resistance loci revealed by GWAS in 2 years

From: Genome-wide association mapping revealed syntenic loci QFhb-4AL and QFhb-5DL for Fusarium head blight resistance in common wheat (Triticum aestivum L.)

Locus	Marker^a	Chr^b	Postion (Mb) ^c	P value	R²(%)^d	Allele	Resistant allele
QFhb-1B.2	GENE-0293_154	1B	549.47	6.20E-04/7.50E-04	6.91–7.18	C/T	C
QFhb-4A	BS00011469_51	4A	621.85	1.00E-04/2.40E-04	8.37–9.36	C/T	C
	Excalibur_c22724_85	4A	622.2	2.00E-05/1.10E-04	9.33–11.63	C/T	T
	Kukri_c24695_273	4A	622.2	2.00E-05/1.10E-04	9.33–11.63	A/G	A
	Kukri_c1073_91	4A	622.24	2.00E-05/1.00E-04	9.65–11.53	C/T	T
	Excalibur_c687_961	4A	622.24	2.00E-05/1.10E-04	9.33–11.63	A/G	A
	Excalibur_c687_907	4A	622.24	2.00E-05/1.10E-04	9.33–11.63	C/T	T
	Excalibur_c687_886	4A	622.24	2.00E-05/1.10E-04	9.33–11.63	A/G	G
QFhb-5D	BobWhite_c13030_406	5D	546.09	2.00E-05/1.30E-04	9.37–11.65	A/G	G
	BS00079676_51	5D	546.65	2.00E-05/1.10E-04	9.33–11.63	A/G	A
	RAC875_c13169_459	5D	546.65	2.00E-05/1.10E-04	9.33–11.63	C/T	C
	D_GA8KES401AL4GG_122	5D	546.65	2.00E-05/1.10E-04	9.33–11.63	C/T	C
	wsnp_JD_c4438_5568170	5D	546.69	8.00E-05/1.60E-04	10.76–11.72	A/G/R	A
	wsnp_JD_c4438_5567972	5D	546.69	2.00E-05/1.10E-04	9.33–11.63	A/G	A
	wsnp_JD_c4438_5567834	5D	546.69	9.00E-05/4.10E-04	9.33–11.63	C/T/Y	C
	BobWhite_c4438_162	5D	546.69	7.00E-06/2.50E-04	8.89–14.18	A/G	G
	IACX10520	5D	546.69	2.00E-05/1.10E-04	9.33–11.63	C/T	T
	BS00088587_51	5D	546.69	2.00E-05/1.10E-04	9.33–11.63	G/T	G
	D_GDS7LZN01CBWNE_99	5D	546.7	2.00E-05/1.10E-04	9.33–11.63	C/T	T
	Kukri_c5528_603	5D	546.7	2.00E-05/1.10E-04	9.33–11.63	C/T	C
	Excalibur_c42190_383	5D	546.91	4.10E-04/4.40-E04	9.55–9.57	A/G/R	A
	Excalibur_c28592_377	5D	546.91	9.00E-05/3.00E-04	8.11–9.47	C/T	T
	Excalibur_c28592_173	5D	546.91	4.10E-04/4.40-E04	9.55–9.57	C/T/Y	T
	Excalibur_c14043_548	5D	546.91	9.00E-05/3.00E-04	8.11–9.47	C/T	C
	CAP8_c145_89	5D	547.27	2.00E-05/1.10E-04	9.33–11.63	C/T	T
	wsnp_CAP11_c209_198467	5D	547.27	2.00E-05/1.30E-04	9.37–11.65	A/G	A
	BS00011794_51	5D	547.27	2.00E-05/1.30E-04	9.37–11.65	C/T	T
QFhb-7A	BobWhite_c22875_239	7A	661.3	2.20E-04/3.00E-04	8.12–8.53	C/T	C

^a Markers were detected at the threshold -log10 (P) = 3.0
^b Chr, Chromosome
^c Physical positions of SNP markers based on wheat genome sequences from the International Wheat Genome Sequencing Consortium (IWGSC, http://www.wheatgenome.org/)
^d Percentage of phenotypic variance explained by the MTA

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