Table 8 The effect of favorable alleles on agronomic traits of Iranian wheat accessions exposed to the well-watered conditions
SNPs | Trait | Marker | ai | Typical accession | Allele | Favorable allele | MAF | p(−log10) | R2 |
|---|---|---|---|---|---|---|---|---|---|
Original | CT | rs62576 | −0.72 | 623,266 | A/G | A | 0.14 | 3.68 | 0.40 |
SN | rs48893 rs10316 | 0.96 1.20 | 624,251 | C/T C/T | T C | 0.32 0.14 | 3.51 3.59 | 0.24 0.20 | |
TKW | rs4772 | 0.77 | 623,345 | A/C | C | 0.43 | 3.23 | 0.11 | |
GFP | rs46504 | 0.90 | 626,158 | A/C | C | 0.19 | 4.30 | 0.13 | |
Imputed | GY | rs36032 | 0.01 | 622,098 | C/T | C | 0.10 | 3.16 | 0.21 |
SW | rs36032 rs736 | 0.02 0.33 | 622,098 Neishabour | C/T A/G | C G | 0.10 0.11 | 3.16 3.56 | 0.21 0.10 | |
SL | rs34314 rs40819 rs36808 | −1.09 −0.70 −0.50 | Neishabour Chamran 621,650 | C/T G/A A/G | T A G | 0.04 0.06 0.39 | 4.71 4.29 3.41 | 0.12 0.12 0.10 | |
DE | rs57386 | −0.11 | 625,081 | A/C | A | 0.22 | 3.61 | 0.07 | |
LG | rs34075 | 1.82 | 627,852 | A/C | A | 0.26 | 3.88 | 0.15 |