Table 7 Description of expected MTAs using imputed SNPs for agronomic traits of Iranian wheat accessions exposed to the rain-fed conditions
Row | Marker | sequence | Trait | Chromosome | Position (bp) | Molecular process | Biological process |
|---|---|---|---|---|---|---|---|
1 | rs64750 | TGCAGTTTATGTACGAACTTTGAGAATTCTCATCAGTGGCCAAACGCCCAAACTAACAATTGAA_34 | Canopy temperature | 4A | 630,897,051-630,899,273 | DNA binding (3 DNA binding domain) | transcription, DNA-templated regulation of transcription, DNA-templated |
2 | rs11116 | TGCAGCAAATTAATCTAGCTTTTAGTTTCCTTCAGGTATTTTGGATATGCCAGCAAATCGAAAG_29 | Peduncle length | 4A | 739,791,132-739,802,785 | ADP binding (NB-ARC) | – |
3 | rs736 | TGCAGAAAGGTACCACTCATTCGTACATCACTCCAACTGATGTATGAAGGTTGTTCATGGCGAC_18 | Spike weight | 4B | 481,233,765-481,237,258 | hydrolase activity | phosphatidylinositol dephosphorylation |
4 | rs55557 | TGCAGGTTTTGCCTAAGAAAAACTCAGAATTCACTCAAAAAAATCAGATTGCTGTAAACTGCAC_15 | Canopy temperature | 4B | 613,031,990-613,041,407 | drug transmembrane transporter activity antiporter activity (Multi antimicrobial extrusion protein) | drug transmembrane transport transmembrane transport |
5 | rs50187 | TGCAGGGCAGTCGAAGCAGTTGCTGGGTCAGAGGCGTGGAGTTGCACTGGAGCAACAGGAGTCG_54 | Spike length | 4B | 222,603,782-222,615,097 | transmembrane transporter activity (Major facilitator, sugar transporter-like) | transmembrane transport |
6 | rs41689 | TGCAGCTTGTCGGTCCTCTCCGACATGGCGTCGAGCACCCGCCGAGTCTGGGCCGAGGGTTTGG_15 | Leaf greenness | 5B | 334,871,156-334,874,981 | catalytic activity ATP binding zinc ion binding pyridoxal phosphate binding cysteine desulfurase activity (Cysteine desulfurase IscS) | iron-sulfur cluster assembly [2Fe-2S] cluster assembly |
7 | rs59282 | TGCAGTCGTGGATAATGCACCTTGCGGTGTCAGGGGGTGACGTCAGCGATGAGTCCACCG_39 | Days to heading | 5B | 11,550,484-11,556,238 | catalytic activity hydrolase activity, hydrolyzing O-glycosyl compounds alpha-galactosidase activity hydrolase activity hydrolase activity, acting on glycosyl bonds raffinose alpha-galactosidase activity (Glycoside hydrolase, family 27) | carbohydrate metabolic process metabolic process |
8 | rs44154 | TGCAGGAGCACCAGCGCGGCAGCGGTGGCGACGACGGGGCTACCAGCTGCCCGCCGAGATCGGA_20 | Spike length | 5B | 363,662,473-363,670,095 | catalytic activity hydrolase activity, hydrolyzing O-glycosyl compounds cellulase activity hydrolase activity hydrolase activity, acting on glycosyl bonds | polysaccharide catabolic process carbohydrate metabolic process metabolic process cellulose catabolic process |
9 | rs17806 | TGCAGCAGGCAAGGTATCTCCAGGCGAACTATATCATCGCAATATACGAGCTTCAGGTGCTCCA_61 | Days to heading, anthsis and physiological maturity | 5B | 457,966,329-457,970,659 | protein binding (F-box-like domain superfamily) | – |
10 | rs25700 | TGCAGCCGCTCTTCGGCGGCTCTTGCATCGATGAGCTCGCGGGTGCGGGTAAGGGGCAAGTCGT_35 | Peduncle length | 5B | 513,646,921-513,649,139 | catalytic activity D-arabinono-1,4-lactone oxidase activity oxidoreductase activity flavin adenine dinucleotide binding FAD binding | oxidation-reduction process |