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Table 1 Differentially expressed genes between genotypes, between the two parents (Wuhan 1 and Nyubai) at 2 dpi, between two groups of DH lines (low and high infection levels) and associated with cis eQTL. gene_id, IWGSC RefSeq v1.0 gene ID; chr, chromosome; description, IWGSC RefSeq v1.0 gene annotation; WH, mean of normalized counts in Wuhan 1 at 2 dpi; NB, mean of normalized counts in Nyubai at 2 dpi; AA, mean of normalized counts for DH lines with genotype AA in the given QTL region; BB, mean of normalized counts for lines with genotype BB in the given QTL region; LF, mean of normalized counts for DH lines with lower levels of F. graminearum and DON; HF, mean of normalized counts for DH lines with higher levels of F. graminearum and DON; pos, position of cis-eQTL peak; LOD, LOD score for the cis eQTL peak

From: Characterization of QTL and eQTL controlling early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan 1 x Nyubai doubled haploid wheat population

gene_id

chr

description

WH

NB

AA

BB

FL

FH

pos

LOD

TraesCS1A01G426000

1A

NBS-LRR disease resistance protein

89.45

0.00

72.01

0.43

53.72

0.33

151.66

45.25

TraesCS1A01G426500

1A

Agenet and BAH domain-containing protein

159.71

7.25

145.04

19.49

121.26

22.28

151.66

27.07

TraesCS1A01G430100

1A

ATP-dependent zinc metalloprotease FtsH

29.94

154.79

38.29

206.08

24.95

310.49

155.70

21.68

TraesCS1A01G430200

1A

ATP-dependent zinc metalloprotease FtsH

19.82

691.10

61.90

933.26

86.32

1425.46

155.70

31.77

TraesCS1A01G432900

1A

Na-translocating NADH-quinone reductase

74.10

0.00

64.93

0.02

56.11

0.00

154.67

51.06

TraesCS1A01G433000

1A

RNA binding protein

1371.50

185.31

548.65

132.63

568.45

99.46

154.67

31.19

TraesCS1A01G439000

1A

3-ketoacyl-CoA synthase

14.89

0.00

18.98

0.00

7.21

0.00

159.79

41.66

TraesCS1A01G439100

1A

piezo-type mechanosensitive ion channel

75.90

0.33

59.40

0.03

25.04

0.00

159.79

51.35

TraesCS4B01G016900

4B

Retrovirus-related Pol polyprotein

17.68

97.27

1.37

102.46

0.69

239.35

22.15

28.33

TraesCS4B01G022400

4B

DUF21 domain-containing protein

72.83

25.85

57.48

22.62

55.05

18.17

23.15

24.75

TraesCS4B01G024600

4B

Leucine-rich repeat protein kinase

19.07

0.55

17.20

2.25

23.16

2.31

30.71

23.16

TraesCS5A01G114700

5A

NAD-dependent protein deacylase

10.87

64.93

14.29

78.50

77.87

21.67

50.38

35.88

TraesCS5A01G196700

5A

Ubiquitin

27.43

104.77

193.48

88.74

16.33

351.23

51.59

3.45