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Table 2 Average values for 7 diversity measures characterizing the markers

From: The impact of sample selection strategies on genetic diversity and representativeness in germplasm bank collections

MethodaSample Size (%)pmisshehoshanmrdNpolyndiag
Pop 0.04660.04000.06550.09620.1333161,104525
CHi50.09890.04660.04850.09840.1533112,8432004
CHn50.04580.03930.06490.09440.1532112,136644
DMi50.05320.04000.06270.09580.1364113,974751
DMn50.05600.04010.06170.09600.1353113,550797
CHi100.08590.04070.05190.09810.1492128,1601606
CHn100.04250.03950.06690.09510.1493127,227600
DMi100.05220.04000.06300.09580.1360128,184719
DMn100.05400.04000.06230.09590.1379128,252774
CHi200.07270.04050.05570.09760.1443141,2121173
CHn200.04590.03950.06510.09500.1444138,439603
DMi200.05150.04000.06320.09580.1357140,265687
DMn200.05260.04000.06280.09590.1369140,189696
CHi300.06490.04050.05850.09760.1414147,391960
CHn300.04720.03930.06410.09470.1416144,521634
DMi300.05120.04000.06330.09580.1356146,291656
DMn300.05180.04000.06310.09590.1362146,273660
CHi400.05950.04060.06080.09760.1392151,177825
CHn400.04990.03940.06300.09480.1393148,610595
DMi400.05110.04000.06340.09580.1355150,016626
DMn400.05130.04000.06330.09580.1358150,062623
CHi500.05530.04060.06260.09760.1374153,933720
CHn500.05530.04060.06260.09760.1374153,933720
DMi500.05070.04000.06350.09580.1356152,828587
DMn500.05070.04000.06350.09580.1356152,828587
SEmin 0.0000220.0000020.0000110.0000060.00000611.52.3
SEmax 0.0001940.0000170.0000640.0000400.000039292.812.6
  1. Sampling method (method) and sample size: proportion of missing values (pmiss), expected and observed heterozygosity (he, ho), entropy Shannon index (shan), Modified Rogers’ distance (mrd), number of retained markers (npoly), and number of markers fixed for only a few accessions (ndiag). Minimum and maximum values of standard errors of the means (SEmin, SEmax)
  2. aPop Population, CHi Core Hunter, independent sample, CHn Core Hunter, nested sample, DMi D-method, independent sample, DMn D-method, nested sample, SE minimum and maximum standard error of mean