Skip to main content

Table 1 Summary of sequencing quality

From: Polysaccharide biosynthetic pathway profiling and putative gene mining of Dendrobium moniliforme using RNA-Seq in different tissues

Sample IDRaw readsClean readsClean basesError (%)Q20 (%)Q30 (%)GC (%)
Dm_R1104,974,434103,116,85615.24Gb0.012698.1294.6146.41
Dm_R2112,417,410110,298,74416.38Gb0.01298.4395.2546.63
Dm_R393,916,31291,971,51213.59Gb0.012598.2294.746.35
Dm_S195,188,10093,364,94813.79Gb0.012997.9994.3146.49
Dm_S283,861,41881,881,04612.08Gb0.012798.1294.4446.1
Dm_S395,368,20892,929,13813.69Gb0.012898.0594.2746.07
Dm_L184,551,99883,097,66212.29Gb0.012698.1394.6446.66
Dm_L277,755,97675,885,67211.18Gb0.012798.1194.4346.36
Dm_L380,621,98078,905,58611.64Gb0.012798.1294.4546.15
Total828,655,836811,451,164119.89Gb    
  1. (1) Q20: percentage of bases with a Phred value > 20; Q30: percentage of bases with a Phred value > 30. (2) Error (%): Base error rate. (3) GC (%): percentage of bases G and C number in the total number of bases