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Table 1 Summary of sequencing quality

From: Polysaccharide biosynthetic pathway profiling and putative gene mining of Dendrobium moniliforme using RNA-Seq in different tissues

Sample ID

Raw reads

Clean reads

Clean bases

Error (%)

Q20 (%)

Q30 (%)

GC (%)

Dm_R1

104,974,434

103,116,856

15.24Gb

0.0126

98.12

94.61

46.41

Dm_R2

112,417,410

110,298,744

16.38Gb

0.012

98.43

95.25

46.63

Dm_R3

93,916,312

91,971,512

13.59Gb

0.0125

98.22

94.7

46.35

Dm_S1

95,188,100

93,364,948

13.79Gb

0.0129

97.99

94.31

46.49

Dm_S2

83,861,418

81,881,046

12.08Gb

0.0127

98.12

94.44

46.1

Dm_S3

95,368,208

92,929,138

13.69Gb

0.0128

98.05

94.27

46.07

Dm_L1

84,551,998

83,097,662

12.29Gb

0.0126

98.13

94.64

46.66

Dm_L2

77,755,976

75,885,672

11.18Gb

0.0127

98.11

94.43

46.36

Dm_L3

80,621,980

78,905,586

11.64Gb

0.0127

98.12

94.45

46.15

Total

828,655,836

811,451,164

119.89Gb

    
  1. (1) Q20: percentage of bases with a Phred value > 20; Q30: percentage of bases with a Phred value > 30. (2) Error (%): Base error rate. (3) GC (%): percentage of bases G and C number in the total number of bases