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Table 2 The number of transitions and transversions observed for the mutagenized lines using SAMtools and Freebayes

From: Development and characterization of an EMS-mutagenized wheat population and identification of salt-tolerant wheat lines

Type of substitution Base to base conversion OA70 OA42
SAMtools FreeBayes SAMtools FreeBayes
Transition G → A 219,110 220,536 250,786 228,122
C → T 227,802 227,030 221,062 206,493
T → C 46,420 81,548 33,158 64,847
A → G 46,417 83,720 33,168 62,467
Transversion C → A 12,932 19,003 9454 14,581
G → T 12,991 19,037 9022 14,200
A → C 10,707 18,810 7492 14,205
T → G 10,612 19,006 7566 14,385
G → C 10,160 16,774 7116 12,942
C → G 10,053 16,967 6967 12,789
T → A 7681 12,201 5916 9873
A → T 7570 12,272 5994 9936