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Table 4 Loci significantly associated with fruit shape index as identified by association analysis

From: Target sequencing reveals genetic diversity, population structure, core-SNP markers, and fruit shape-associated loci in pepper varieties

Locia

CM334 (v.1.55) [13]

Zunla-1 (v2.0) [3]

p-value

Phenotypic variation explained (%)

Chr.

Physical position (bp)

Chr.

Physical position (bp)

CaSSR013

1

2,895,632

1

2,383,961

2.16E-06

9.7

CaSSR090

2

153,032,594

2

143,851,440

1.36E-06

8.2

CaSSR105

3

143,624,183

3

95,195,822

6.99E-05

9.1

CaSSR091

4

762,569

4

214,859,753

2.17E-05

8.9

CaSSR039

4

ND

4

215,677,699

1.99E-05

8.9

CaSSR044

6

234,686,966

6

1,041,327

6.95E-08

12.7

CaSSR107

6

193,777,105

6

39,731,428

1.88E-05

12.4

CaSSR077

12

226,618,758

12

9,517,953

7.54E-08

10.1

CaSNP112

12

47,349,405

12

181,587,490

8.45E-06

7.9

  1. aThe interval between CaSSR091 and CaSSR039 was within ~ 820 kb; thus, these two loci were considered at the same associated region