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Table 4 Loci significantly associated with fruit shape index as identified by association analysis

From: Target sequencing reveals genetic diversity, population structure, core-SNP markers, and fruit shape-associated loci in pepper varieties

LociaCM334 (v.1.55) [13]Zunla-1 (v2.0) [3]p-valuePhenotypic variation explained (%)
Chr.Physical position (bp)Chr.Physical position (bp)
CaSSR01312,895,63212,383,9612.16E-069.7
CaSSR0902153,032,5942143,851,4401.36E-068.2
CaSSR1053143,624,183395,195,8226.99E-059.1
CaSSR0914762,5694214,859,7532.17E-058.9
CaSSR0394ND4215,677,6991.99E-058.9
CaSSR0446234,686,96661,041,3276.95E-0812.7
CaSSR1076193,777,105639,731,4281.88E-0512.4
CaSSR07712226,618,758129,517,9537.54E-0810.1
CaSNP1121247,349,40512181,587,4908.45E-067.9
  1. aThe interval between CaSSR091 and CaSSR039 was within ~ 820 kb; thus, these two loci were considered at the same associated region