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Table 3 The genome areas identified to be rich in SNDs among the twelve acquired chloroplast genomes. Genome areas that have more than 10 SNDs per 500 bp are considered to be rich in SNDs

From: Twelve complete chloroplast genomes of wild peanuts: great genetic resources and a better understanding of Arachis phylogeny

Genome position

Count

Region

Genomic context

Sequence content

66,000–66,500

47

LSC

psbE~petL

spacer

44,500–45,000

34

LSC

rpoC2

coding

112,000–112,500

32

IRA; SSC

trnN-GUU~ndhF; ndhF

spacer; coding

115,000–115,500

26

SSC

rpl32; rpl32~trnL-UAG

coding; spacer

15,000–15,500

23

LSC

trnL-UAA~trnL-UGU; trnT-UGU; trnT-UGU~rps4

spacer; coding; spacer

119,500–120,000

22

SSC

psaC~ndhE; ndhE~ndhG

spacer; spacer

115,500–116,000

21

SSC

rpl32~trnL-UAG; trnL-UAG; trnL-UAG~ccsA

spacer; coding; spacer

53,000–53,500

20

LSC

trnR-UCU; trnR-UCU~trnS-GCU

coding; spacer

56,000–56,500

20

LSC

psbK; psbK~trnQ-UUG

coding; spacer

56,500–57,000

20

LSC

psbK~trnQ-UUG; trnQ-UUG; trnQ-UUG~accD

spacer; coding; spacer

81,000–81,500

20

LSC

rps11~rpl36; rpl36; rpl36~rps8

spacer; coding; spacer

114,500–115,000

20

SSC

ndhF~rpl32; rpl32

spacer; coding

86,000–86,500

18

LSC;IRA

rps19; rps19~rpl2; rpl2

coding; spacer; coding

10,000–10,500

17

LSC

trnV-UAC; trnV-UAC~ndhC

coding; spacer

14,500–15,000

17

LSC

trnL-UAA~trnL-UGU

spacer

57,000–57,500

17

LSC

trnQ-UUG~accD

spacer

130,500–130,894

17

SSC

ycf1

coding

130,000–130,500

16

SSC

ycf2

coding

1500–2000

14

LSC

psbA~trnK-UUU; trnK-UUU

spacer; coding

25,000–25,500

14

LSC

trnG-UCC~psbZ

spacer

48,000–48,500

14

LSC

atpI~atpH

spacer

54,500–55,000

14

LSC

trnR-UCU~trnS-GCU

spacer

29,000–29,500

13

LSC

psbD; psbD~trnT-GGU

coding; spacer

29,000–29,500

13

LSC

psbD; psbD~trnT-GGU

coding; spacer

122,500–123,000

13

SSC

ndhA

coding

18,500–19,000

12

LSC

ycf3; ycf3~psaA

coding; spacer

48,500–49,000

12

LSC

atpI~atpH

spacer

125,500–126,000

12

SSC

rps15; rps15~ycf1

coding; spacer

0–500

11

LSC

trnH-GUG; trnH-GUG~psbA;psbA

coding; spacer; coding

13,000–13,500

11

LSC

ndhJ~trnF-GAA; trnF-GAA; trnF-GAA~trnL-UAA

spacer; coding; spacer

4000–4500

10

LSC

matK~rbcL

spacer

4500–5000

10

LSC

matK~rbcL

spacer

31,500–32,000

10

LSC

trnE-UUC; trnE-UUC~trnY-GUA; trnY-GUA;trnY-GUA~trnD-GUC

coding; spacer; coding; spacer

33,500–34,000

10

LSC

psbM~petN; petN; petN~trnC-GCA

spacer; coding; spacer

49,500–50,000

10

LSC

atpH; atpH~atpF; atpF

coding; spacer; coding

58,000–58,500

10

LSC

trnU-UUG~accD; accD

spacer; coding

80,500–81,000

10

LSC

rps11; rps11~rpl36

coding; spacer

101,500–102,000

10

IRA

rps7~trnV-GAC

spacer

123,000–123,500

10

SSC

ndhA

coding