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Table 3 The genome areas identified to be rich in SNDs among the twelve acquired chloroplast genomes. Genome areas that have more than 10 SNDs per 500 bp are considered to be rich in SNDs

From: Twelve complete chloroplast genomes of wild peanuts: great genetic resources and a better understanding of Arachis phylogeny

Genome positionCountRegionGenomic contextSequence content
66,000–66,50047LSCpsbE~petLspacer
44,500–45,00034LSCrpoC2coding
112,000–112,50032IRA; SSCtrnN-GUU~ndhF; ndhFspacer; coding
115,000–115,50026SSCrpl32; rpl32~trnL-UAGcoding; spacer
15,000–15,50023LSCtrnL-UAA~trnL-UGU; trnT-UGU; trnT-UGU~rps4spacer; coding; spacer
119,500–120,00022SSCpsaC~ndhE; ndhE~ndhGspacer; spacer
115,500–116,00021SSCrpl32~trnL-UAG; trnL-UAG; trnL-UAG~ccsAspacer; coding; spacer
53,000–53,50020LSCtrnR-UCU; trnR-UCU~trnS-GCUcoding; spacer
56,000–56,50020LSCpsbK; psbK~trnQ-UUGcoding; spacer
56,500–57,00020LSCpsbK~trnQ-UUG; trnQ-UUG; trnQ-UUG~accDspacer; coding; spacer
81,000–81,50020LSCrps11~rpl36; rpl36; rpl36~rps8spacer; coding; spacer
114,500–115,00020SSCndhF~rpl32; rpl32spacer; coding
86,000–86,50018LSC;IRArps19; rps19~rpl2; rpl2coding; spacer; coding
10,000–10,50017LSCtrnV-UAC; trnV-UAC~ndhCcoding; spacer
14,500–15,00017LSCtrnL-UAA~trnL-UGUspacer
57,000–57,50017LSCtrnQ-UUG~accDspacer
130,500–130,89417SSCycf1coding
130,000–130,50016SSCycf2coding
1500–200014LSCpsbA~trnK-UUU; trnK-UUUspacer; coding
25,000–25,50014LSCtrnG-UCC~psbZspacer
48,000–48,50014LSCatpI~atpHspacer
54,500–55,00014LSCtrnR-UCU~trnS-GCUspacer
29,000–29,50013LSCpsbD; psbD~trnT-GGUcoding; spacer
29,000–29,50013LSCpsbD; psbD~trnT-GGUcoding; spacer
122,500–123,00013SSCndhAcoding
18,500–19,00012LSCycf3; ycf3~psaAcoding; spacer
48,500–49,00012LSCatpI~atpHspacer
125,500–126,00012SSCrps15; rps15~ycf1coding; spacer
0–50011LSCtrnH-GUG; trnH-GUG~psbA;psbAcoding; spacer; coding
13,000–13,50011LSCndhJ~trnF-GAA; trnF-GAA; trnF-GAA~trnL-UAAspacer; coding; spacer
4000–450010LSCmatK~rbcLspacer
4500–500010LSCmatK~rbcLspacer
31,500–32,00010LSCtrnE-UUC; trnE-UUC~trnY-GUA; trnY-GUA;trnY-GUA~trnD-GUCcoding; spacer; coding; spacer
33,500–34,00010LSCpsbM~petN; petN; petN~trnC-GCAspacer; coding; spacer
49,500–50,00010LSCatpH; atpH~atpF; atpFcoding; spacer; coding
58,000–58,50010LSCtrnU-UUG~accD; accDspacer; coding
80,500–81,00010LSCrps11; rps11~rpl36coding; spacer
101,500–102,00010IRArps7~trnV-GACspacer
123,000–123,50010SSCndhAcoding