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Fig. 5 | BMC Plant Biology

Fig. 5

From: Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought

Fig. 5

Identification and function inference of guayule stress-responsive lncRNAs. (a) Graphical representation of a multiple sequence alignment (MSA) of guayule HID1, along with sequence homologs from Arabidopsis (AtHID1), sunflower (HannHID1), lettuce (LsatHID1), and rice (OsatHID1). 100% sequence identity between all sequences in the MSA are represented by green in the coverage bar across the top. (b) Experimental design to identify putative guayule lncRNAs. “Known proteins” refers to proteins with annotated domains or that are found in the InterPro database. TEs = transposable elements. (c) Phylogenetic representation of the number of sequence homologs identified for the guayule lncRNAs. Number of lncRNA sequence homologs annotated as a lncRNA in either H. annuus or L. sativa is shown. Number of conserved guayule lncRNAs for which a miRNA binding motif is conserved is also indicated. (d) Graphical representation of an MSA of the putative miRNA sponge, GFTW01168370.1, with the 100% conserved miRNA binding site shown by the blue box along the top of the alignment. The corresponding lncRNA IDs for sunflower and lettuce are shown in this alignment

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BMC Plant Biology

ISSN: 1471-2229

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