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Table 2 DEPs with high connectivity degree in PPI analysis between groups

From: Phenotypic analysis combined with tandem mass tags (TMT) labeling reveal the heterogeneity of strawberry stolon buds

Group

Protein accession

Degree

Description

Unique peptide

Fold change

ASB/DSB

XP_004304484.1

42

splicing factor 3A subunit 2 isoform X1

5

1.29

FANhyb_rscf00000157.1.g00010.1

37

60S ribosomal protein L7a-2

6

1.24

FANhyb_rscf00000522.1.g00007.1

37

small nuclear ribonucleoprotein-associated protein B

3

1.31

XP_004290666.1

36

small nuclear ribonucleoprotein Sm D1-like

4

1.28

XP_004303828.1

35

60S ribosomal protein L7-2

2

1.53

XP_004287907.1

34

U1 small nuclear ribonucleoprotein 70 kDa

10

1.36

XP_004308170.1

33

40S ribosomal protein S20-2

6

1.28

XP_004299660.1

33

40S ribosomal protein S6

8

1.25

FANhyb_rscf00005750.1.g00001.1

33

30S ribosomal protein S17, chloroplastic-like

2

1.27

XP_004307020.1

33

pyruvate kinase, cytosolic isozyme-like

16

0.83

XP_004304484.1

42

splicing factor 3A subunit 2 isoform X1

5

1.29

XP_004297699.1

33

pyruvate kinase, cytosolic isozyme-like

18

0.82

FANhyb_icon14422311_s.1.g00001.1

32

60S ribosomal protein L27a-3

2

1.28

XP_004296676.1

32

60S ribosomal protein L27a-3

2

1.24

XP_004306930.1

32

40S ribosomal protein S13

1

1.62

FANhyb_rscf00000738.1.g00007.1

32

serine/arginine-rich splicing factor RS31-like isoform X1

7

1.50

XP_004306844.1

32

serine/arginine-rich splicing factor RS41-like isoform X1

5

1.50

XP_011470401.1

32

serine/arginine-rich splicing factor RS41 isoform X1

5

1.29

XP_004300041.1

31

uncharacterized RNA-binding protein C1827.05c

3

1.26

XP_004299114.1

31

SART-1 family protein DOT2

12

1.26

XP_004297699.1

33

pyruvate kinase, cytosolic isozyme-like

18

0.82

RLB/DSB

FANhyb_icon00002169_a.1.g00001.1

19

LOW QUALITY PROTEIN: replication factor C subunit 1

1

1.37

XP_011458268.1

12

DNA replication licensing factor MCM4

18

1.22

XP_004299199.1

12

protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

1

3.24

FANhyb_icon00004233_a.1.g00001.1

12

structural maintenance of chromosomes protein 2-1-like

1

1.46

XP_011460181.1

11

DNA replication licensing factor MCM3

2

1.26

XP_004300454.1

11

DNA replication licensing factor MCM7

18

1.27

RLB/ASB

FANhyb_rscf00000086.1.g00005.1

16

glutamate synthase 1 [NADH], chloroplastic isoform X1

20

0.74

XP_004299600.1

15

acetyl-CoA carboxylase 1-like isoform X1

29

0.65

XP_004297699.1

14

pyruvate kinase, cytosolic isozyme-like

14

1.23

FANhyb_icon00042639_a.1.g00001.1

12

hypothetical protein B456_008G262000

1

0.75

FANhyb_rscf00005750.1.g00001.1

12

30S ribosomal protein S17, chloroplastic-like

2

0.77

XP_004308170.1

12

40S ribosomal protein S20-2

6

0.81

FANhyb_rscf00001394.1.g00002.1

12

glutamate dehydrogenase 1

5

2.05

XP_004287377.1

12

probable histone H2A variant 3

2

0.54

XP_004309949.1

12

4-coumarate-CoA ligase 2-like

4

0.50

FANhyb_rscf00001010.1.g00003.1

11

40S ribosomal protein S24-1-like

1

0.80

FANhyb_rscf00000697.1.g00007.1

11

40S ribosomal protein S24-1

1

0.69