Table 1 Confirmation of expression levels of miRNAs and their targeted lncRNAs and mRNAs based on qRT-PCR
| Â | RNA | log2FC(CuR/CKR) by RNAseq | log2FC(CuR/CKR) by qPCR | A. thaliana description |
|---|---|---|---|---|
| Â | miR398b | -1.72561 | -1.22962 | Â |
predicted targets of miR398b | TCONS_00012501 | 3.6 | 4.77311 | Â |
TCONS_00012960 | 1.32 | 1.392306 | Â | |
Cg6g016060 | 3.06 | 3.721868 | ABC transporter G family member 39 | |
Cg1g001620 | 2.35 | 2.21382 | Oligopeptide transporter 7 | |
Cg1g015400 | 4.19 | 3.447331 | Multicopper oxidase LPR1 | |
Cg5g003300 | 1.76 | 1.164213 | ABC transporter A family member 7 | |
Cg8g024350 | 1.82 | undetected | Mitogen-activated protein kinase kinase 14 | |
| Â | miR8175 | 1.089447 | 1.058019 | Â |
predicted targets of miR8175 | Cg6g001870 | -1.02 | undetected | Laccase-11 |
Cg4g001090 | -2.13 | -1.88539 | Protein TIC 55, chloroplastic | |
Cg9g027310 | -2.25 | -2.70294 | Detoxifying efflux carrier 35 | |
Cg2g021840 | -2.35 | -4.28181 | Cyclic nucleotide-gated ion channel 4 | |
Cg6g016050 | -2.39 | -1.89089 | ABC transporter G family member 34 | |
Cg2g047100 | -2.4 | -2.92599 | Ferric reduction oxidase 7 | |
Cg7g023310 | -2.83 | -2.96635 | MATE efflux family protein 1 | |
Cg2g001540 | -3.09 | -4.80108 | Transducin/WD40 repeat-like superfamily protein | |
Cg6g005760 | -4.11 | -4.6826 | Copper transporter 1 | |
| Â | miR157c-3p | 1.98457 | 1.730227 | Â |
predicted targets of miR157c-3p | Cg5g033620 | -1.1 | -2.39108 | E3 ubiquitin-protein ligase BAH1 |
Cg6g020410 | -1.21 | -1.88539 | ABC transporter G family member 14 | |
Cg5g026950 | -1.23 | undetected | RING/U-box superfamily protein | |
Cg6g016780 | -1.54 | -2.09326 | RCC1family with FYVE zinc finger domain | |
Cg5g011170 | -1.72 | -1.56999 | Chaperone protein ClpB1 | |
Cg7g023250 | -1.76 | -1.79581 | E3 ubiquitin ligase BIG BROTHER | |
Cg9g005380 | -1.81 | -1.71421 | Copper amine oxidase family protein | |
Cg9g005370 | -1.83 | -1.90385 | Copper amine oxidase family protein | |
Cg1g009950 | -2.04 | -3.01473 | calmodulin-binding family protein | |
Cg4g021370 | -2.65 | -3.17684 | Cadmium/zinc-transporting ATPase HMA2 | |
Cg2g001540 | -3.09 | -4.80108 | Transducin/WD40 repeat-like superfamily protein | |
Cg2g017030 | -3.4 | -4.59911 | Transducin/WD40 repeat-like superfamily protein | |
Cg6g016070 | -1.13 | -1.13584 | ABC transporter G family member 34 | |
| Â | Nov-m0284-5p | 1.198039 | 1.01773 | Â |
predicted targets of Nov-m0284-5p | Cg6g016070 | -1.13 | -1.13584 | ABC transporter G family member 34 |
Cg5g000690 | -1.7 | undetected | Oligopeptide transporter 7 | |
Cg6g016050 | -2.39 | -1.89089 | ABC transporter G family member 34 | |
| Â | miR166a-5p | 2.37994 | 2.444839 | Â |
predicted targets of miR166a-5p | TCONS_00025983 | -7.16 | -3.31462 | Â |
TCONS_00034874 | -2.3 | -2.30161 | Â | |
TCONS_00036810 | -1.92 | -1.70539 | Â | |
Cg2g034240 | -1.17 | -2.05887 | MATE efflux family protein | |
Cg3g013610 | -2.61 | -3.0194 | Oligopeptide transporter 4 | |
Cg3g013620 | -1.5 | -1.66687 | Oligopeptide transporter 2 | |
Cg5g001820 | -1.35 | undetected | ABC transporter C family member 10 | |
Cg5g008640 | -3.08 | -3.69684 | Monocopper oxidase-like protein SKU5 | |
Cg5g011170 | -1.72 | -1.56999 | Chaperone protein ClpB1 | |
Cg5g018290 | -1.11 | -0.16429 | ABC transporter G family member 37 | |
Cg6g006410 | -2.24 | -3.65275 | Laccase-4 | |
Cg6g016050 | -2.39 | -1.89089 | ABC transporter G family member 34 | |
Cg6g016070 | -1.13 | -1.13584 | ABC transporter G family member 34 | |
Cg7g005630 | -1.6 | -1.39821 | ABC transporter G family member 6 | |
Cg7g023250 | -1.76 | -1.79581 | E3 ubiquitin ligase BIG BROTHER | |
Cg8g001210 | -1.53 | undetected | Major facilitator superfamily protein | |
Cg9g000380 | -1.08 | undetected | ABC transporter G family member 37 | |
| Â | miR165a-5p | 2.203897 | 2.322514 | Â |
predicted targets of miR165a-5p | TCONS_00036810 | -1.92 | -1.70539 | Â |
Cg2g013970 | -2.75 | -2.55165 | Laccase-3 | |
Cg3g013430 | -1.32 | -1.66301 | MATE efflux family protein | |
Cg3g013610 | -2.61 | -3.01937 | Oligopeptide transporter 4 | |
Cg3g013620 | -1.5 | -1.66687 | Oligopeptide transporter 2 | |
Cg3g024660 | -1.87 | -2.19929 | Major facilitator superfamily protein | |
Cg3g024680 | -1.96 | -2.62043 | Plastocyanin major isoform, chloroplastic | |
Cg5g011170 | -1.72 | -1.56999 | Chaperone protein ClpB1 | |
Cg5g018290 | -1.11 | -0.16429 | ABC transporter G family member 37 | |
Cg6g016050 | -2.39 | -1.89089 | ABC transporter G family member 34 | |
Cg7g000950 | -2.35 | -2.44466 | Laccase-4 | |
Cg7g023250 | -1.76 | -1.79581 | E3 ubiquitin ligase BIG BROTHER | |
Cg8g001210 | -1.53 | undetected | Major facilitator superfamily protein | |
Cg8g024760 | -1.34 | -0.91518 | Calcineurin-like metallo-phosphoesterase superfamily protein | |
Cg9g000380 | -1.08 | undetected | ABC transporter G family member 37 |