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Table 1 Confirmation of expression levels of miRNAs and their targeted lncRNAs and mRNAs based on qRT-PCR

From: Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

 RNAlog2FC(CuR/CKR) by RNAseqlog2FC(CuR/CKR) by qPCRA. thaliana description
 miR398b-1.72561-1.22962 
predicted targets of miR398bTCONS_000125013.64.77311 
TCONS_000129601.321.392306 
Cg6g0160603.063.721868ABC transporter G family member 39
Cg1g0016202.352.21382Oligopeptide transporter 7
Cg1g0154004.193.447331Multicopper oxidase LPR1
Cg5g0033001.761.164213ABC transporter A family member 7
Cg8g0243501.82undetectedMitogen-activated protein kinase kinase 14
 miR81751.0894471.058019 
predicted targets of miR8175Cg6g001870-1.02undetectedLaccase-11
Cg4g001090-2.13-1.88539Protein TIC 55, chloroplastic
Cg9g027310-2.25-2.70294Detoxifying efflux carrier 35
Cg2g021840-2.35-4.28181Cyclic nucleotide-gated ion channel 4
Cg6g016050-2.39-1.89089ABC transporter G family member 34
Cg2g047100-2.4-2.92599Ferric reduction oxidase 7
Cg7g023310-2.83-2.96635MATE efflux family protein 1
Cg2g001540-3.09-4.80108Transducin/WD40 repeat-like superfamily protein
Cg6g005760-4.11-4.6826Copper transporter 1
 miR157c-3p1.984571.730227 
predicted targets of miR157c-3pCg5g033620-1.1-2.39108E3 ubiquitin-protein ligase BAH1
Cg6g020410-1.21-1.88539ABC transporter G family member 14
Cg5g026950-1.23undetectedRING/U-box superfamily protein
Cg6g016780-1.54-2.09326RCC1family with FYVE zinc finger domain
Cg5g011170-1.72-1.56999Chaperone protein ClpB1
Cg7g023250-1.76-1.79581E3 ubiquitin ligase BIG BROTHER
Cg9g005380-1.81-1.71421Copper amine oxidase family protein
Cg9g005370-1.83-1.90385Copper amine oxidase family protein
Cg1g009950-2.04-3.01473calmodulin-binding family protein
Cg4g021370-2.65-3.17684Cadmium/zinc-transporting ATPase HMA2
Cg2g001540-3.09-4.80108Transducin/WD40 repeat-like superfamily protein
Cg2g017030-3.4-4.59911Transducin/WD40 repeat-like superfamily protein
Cg6g016070-1.13-1.13584ABC transporter G family member 34
 Nov-m0284-5p1.1980391.01773 
predicted targets of Nov-m0284-5pCg6g016070-1.13-1.13584ABC transporter G family member 34
Cg5g000690-1.7undetectedOligopeptide transporter 7
Cg6g016050-2.39-1.89089ABC transporter G family member 34
 miR166a-5p2.379942.444839 
predicted targets of miR166a-5pTCONS_00025983-7.16-3.31462 
TCONS_00034874-2.3-2.30161 
TCONS_00036810-1.92-1.70539 
Cg2g034240-1.17-2.05887MATE efflux family protein
Cg3g013610-2.61-3.0194Oligopeptide transporter 4
Cg3g013620-1.5-1.66687Oligopeptide transporter 2
Cg5g001820-1.35undetectedABC transporter C family member 10
Cg5g008640-3.08-3.69684Monocopper oxidase-like protein SKU5
Cg5g011170-1.72-1.56999Chaperone protein ClpB1
Cg5g018290-1.11-0.16429ABC transporter G family member 37
Cg6g006410-2.24-3.65275Laccase-4
Cg6g016050-2.39-1.89089ABC transporter G family member 34
Cg6g016070-1.13-1.13584ABC transporter G family member 34
Cg7g005630-1.6-1.39821ABC transporter G family member 6
Cg7g023250-1.76-1.79581E3 ubiquitin ligase BIG BROTHER
Cg8g001210-1.53undetectedMajor facilitator superfamily protein
Cg9g000380-1.08undetectedABC transporter G family member 37
 miR165a-5p2.2038972.322514 
predicted targets of miR165a-5pTCONS_00036810-1.92-1.70539 
Cg2g013970-2.75-2.55165Laccase-3
Cg3g013430-1.32-1.66301MATE efflux family protein
Cg3g013610-2.61-3.01937Oligopeptide transporter 4
Cg3g013620-1.5-1.66687Oligopeptide transporter 2
Cg3g024660-1.87-2.19929Major facilitator superfamily protein
Cg3g024680-1.96-2.62043Plastocyanin major isoform, chloroplastic
Cg5g011170-1.72-1.56999Chaperone protein ClpB1
Cg5g018290-1.11-0.16429ABC transporter G family member 37
Cg6g016050-2.39-1.89089ABC transporter G family member 34
Cg7g000950-2.35-2.44466Laccase-4
Cg7g023250-1.76-1.79581E3 ubiquitin ligase BIG BROTHER
Cg8g001210-1.53undetectedMajor facilitator superfamily protein
Cg8g024760-1.34-0.91518Calcineurin-like metallo-phosphoesterase superfamily protein
Cg9g000380-1.08undetectedABC transporter G family member 37