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Table 7 List of 12 candidate genes with a known function related to photosynthesis and metabolic detoxification

From: Inheritance of pre-emergent metribuzin tolerance and putative gene discovery through high-throughput SNP array in wheat (Triticum aestivum L.)

SNP name

Chromosome

A/B allele

Tolerant allele

Overlapping gene ID

Length (bp) and direction

Molecular function

Biological process

wsnp_Ex_c13505_21253168

3B

A/G

B

TRAES_3BF091600250CFD_c1

3614–

Glycosyltransferase activity

Sucrose synthase activity

xenobiotics degradation

Kukri_c5295_1015

3B

T/G

A

TraesCS3B02G461800

3614–

Glycosyltransferase activity

Sucrose metabolic process

xenobiotics degradation

BS00015680_51

2D

T/C

B

TraesCS2D02G598000

822–

Glutathione peroxidase (oxidoreductase, Peroxidase)

Protection from oxidative damage

Kukri_c2937_649

2A

A/G

B

TraesCS2A02G210100

3125–

Glycosyltransferase activity

Metabolic detoxification/

xenobiotics degradation

CAP11_c3631_75

4B

A/G

B

TraesCS4B02G056800

1564+

Kinase and transferase activity

ATP-,

metal-, magnesium- and nucleotide-binding

BS00040929_51

7A

A/G

B

TraesCS7A02G130600

1495+

Glutathione S-transferase activity

Phase II metabolic isozymes involved in xenobiotic detoxification

Kukri_c1831_1243

4A

A/G

B

TraesCS4A02G446700

3084–

Sucrose synthase activity

Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways

tplb0060b03_921

7B

T/C

A

TraesCS7B02G486500

1549–

Photosynthesis system II assembly factor YCF48

YCF48 is necessary for efficient assembly and repair of the PSII.

RAC875_c16644_491

7D

A/G

A

TraesCS7D02G258300

1381+

Ubiquitination pathway

Stress response, DNA repair, signal transduction, cell-cycle control, transcriptional regulation and vesicular traffic.

Tdurum_contig10482_110

4A

T/C

A

TraesCS4A02G445600

1952+

Monooxygenase, oxidoreductase, iron and metal binding

Cytochrome P450 family metabolize potentially toxic compounds including drugs and products of endogenous metabolism

GENE-1887_85

3B

T/G

A

TraesCS3B02G045400

1437–

Oxidoreductase activity

Catalysis of oxidation-reduction

reaction

Tdurum_contig14460_561

7B

T/C

A

TraesCS7B02G016400

3807–

ATP- and nucleotide-binding; hydrolysis of ATP to energize diverse biological systems.

ABC module is known to bind and hydrolyze ATP in numerous biological processes including multiple drug resistance

  1. Gene ID is the TRAES number according to the URGI-Jbrowse database on Ensembl Plants release; +/− indicates the direction (forward/reverse) on the strand; bp indicates base pairs