Skip to main content

Table 2 Identification of down-regulated DEGs at initial (May) and rapid (July) thickening stages of P. notoginseng taproots

From: Comparative transcriptome and metabolome analyses provide new insights into the molecular mechanisms underlying taproot thickening in Panax notoginseng

ID Description TAIR ID RPKM
Mar May Jul Nov
Signal transduction and transcription
 Unigene0046518 AP2/ERF domain-containing transcription factor DREB1D AT5G51190 187.6 52.7 23.5 23.2
 Unigene0019102 Ethylene-responsive transcription factor 2-like AT4G17500 312.9 103.8 47.3 50.4
 Unigene0036608 Auxin-responsive protein IAA7-like AT3G23050 253.7 94.7 47.3 30.3
 Unigene0039183 60 kDa jasmonate-induced protein-like / 132.9 50.8 13.2 16.0
 Unigene0018277 Calcium-binding protein PBP1-like AT5G54490 107.9 50.6 19.4 19.6
 Unigene0017010 Snakin-2-like AT1G75750 152.6 60.2 16.9 9.0
 Unigene0000195 Organ-specific protein S2-like / 5774.5 2708.3 893.4 680.4
 Unigene0024355 Organ-specific protein S2-like / 2221.2 1084.2 307.9 264.8
 Unigene0072131 ROTUNDIFOLIA like 7 AT3G55515 56.8 26.1 12.3 10.9
 Unigene0053253 DUF793 domain-containing protein AT1G01550 317.4 63.1 21.8 25.3
 Unigene0020203 F-box protein AT2G27310 283.0 99.5 43.6 42.7
 Unigene0027395 Small ubiquitin-related modifier 2-A-like AT5G55170 967.4 239.5 96.2 199.8
 Unigene0035890 Lectin protein kinase family protein AT5G24080 83.8 40.0 14.9 11.1
Stress/defense response
 Unigene0035676 Metallothionein-like protein 1 AT3G09390 991.4 287.2 97.9 192.2
 Unigene0029269 Cysteine protease XCP2 AT1G20850 72.0 35.3 12.6 8.9
 Unigene0027617 Pathogenesis-related protein 2 / 273.6 46.2 12.8 8.8
 Unigene0020874 Metallothiol transferase FosB / 62.9 26.3 13.0 13.5
 Unigene0038257 Isocitrate dehydrogenase AT1G65930 127.3 63.6 27.5 14.6
Lipid metabolism
 Unigene0039640 Delta(12)-fatty-acid desaturase FAD2-like AT3G12120 100.5 44.8 20.2 7.6
 *Unigene0010076 Delta(12)-fatty-acid desaturase FAD2-like AT3G12120 188.0 68.9 28.5 12.5
 *Unigene0053831 Delta(12) fatty acid desaturase FAD2-like AT3G12120 686.0 327.6 113.8 53.0
 *Unigene0014051 Delta(12)-fatty-acid desaturase FAD2-like AT3G12120 438.8 215.2 77.5 25.0
 Unigene0030153 Delta(12)-fatty-acid desaturase FAD2-like AT3G12120 325.8 118.2 49.0 26.8
 Unigene0070830 PI-PLC X-box domain-containing protein DDB_G0293730 AT4G38690 68.3 32.5 15.9 10.4
 Unigene0036376 DUF563 domain-containing protein AT2G41640 97.6 45.9 14.2 13.8
 *Unigene0041208 CDP-diacylglycerol-glycerol-3-phosphate3-phosphatidyltransferase AT3G48180 182.8 82.5 31.1 15.0
 Unigene0022367 EXORDIUM-like 5 AT2G17230 156.7 70.4 14.6 28.3
 Unigene0008870 GDSL-like Lipase/Acylhydrolase superfamily protein AT3G26430 871.2 395.8 98.1 122.2
Secondary metabolism
 Unigene0034152 GBR5 / 2635.8 1186.3 411.3 465.4
 Unigene0033007 Peroxidase 5-like AT1G05260 219.3 40.2 15.8 29.5
 Unigene0027454 Cytochrome P450 CYP72A219-like AT3G14630 91.4 23.7 11.1 14.3
 Unigene0045855 Caffeoyl-CoA O-methyltransferase AT4G34050 219.5 76.9 37.6 27.5
 Unigene0026392 Polyphenol oxidase / 427.5 135.0 14.7 7.5
 Unigene0040370 Shikimate O-hydroxycinnamoyltransferase-like AT5G48930 87.1 38.5 12.1 8.4
 Unigene0032140 Protein WALLS ARE THIN 1-like AT1G75500 205.6 40.0 19.1 26.1
Cell wall metabolism
 Unigene0010296 Extensin-2-like / 183.0 88.0 15.5 9.7
 Unigene0038129 Extensin-3-like AT3G09925 414.7 162.1 12.0 9.5
Transporter
 Unigene0054315 Copper-transporting ATPase RAN1-like (HMA7) AT5G44790 58.1 25.9 12.2 26.3
 Unigene0031786 High-affinity nitrate transporter 3.1-like AT5G50200 290.4 58.0 21.4 29.0
 Unigene0026653 Aquaporin TIP2–2 AT4G17340 578.2 166.1 26.4 56.6
 Unigene0028381 Nodulin MtN21-like transporter family protein At5g07050-like AT5G07050 55.2 26.5 11.2 12.1
Undefined
 Unigene0020809 Uncharacterized protein LOC108212493 AT2G47485 307.8 25.5 11.5 9.9
 Unigene0025188 BnaC05g08810D [Brassica napus] AT1G13360 128.0 44.2 13.0 23.4
 Unigene0014035 Formin-like protein 18 AT1G10020 205.9 46.5 18.0 22.9
 Unigene0047041 Plant organelle RNA recognition domain-containing protein AT1G57680 136.9 67.3 32.8 95.6
 Unigene0063477 Serine/arginine repetitive matrix protein 1 AT4G02040 59.9 25.4 11.6 14.1
 Unigene0029630 Pyridoxal phosphate-dependent transferase AT5G51920 74.9 29.1 13.1 10.7
  1. * Asterisk indicates down-regulated DEGs among initial (May), rapid (July) and stable (November) thickening stages of P. notoginseng taproots