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Table 1 Identification of up-regulated DEGs at initial (May) and rapid (July) thickening stages of P. notoginseng taproots

From: Comparative transcriptome and metabolome analyses provide new insights into the molecular mechanisms underlying taproot thickening in Panax notoginseng

ID Description TAIR ID RPKM
Mar May Jul Nov
Carbohydrate and storage metabolism
 Unigene0007855 RNase-like major storage protein AT2G02990 22.3 3071.0 129,797.0 44,296.7
 Unigene0036675 RNase-like major storage protein AT2G02990 25.6 5736.2 140,415.0 48,725.4
 Unigene0001769 Beta-amylase 5 AT4G15210 55.9 3345.0 11,618.7 4698.6
 Unigene0035964 Alpha-1,4 glucan phosphorylase L isozyme AT3G29320 8.4 302.2 728.3 570.6
 Unigene0011567 Starch branching enzyme I AT2G36390 18.4 259.8 1087.5 850.9
 Unigene0036902 Vacuolar protein sorting-associated protein 32 homolog 2 AT4G29160 8.1 194.4 426.2 369.6
Signal transduction and transcription
 Unigene0032604 Protein phosphatase 2C 37-like AT3G11410 11.9 19.1 53.7 77.2
 Unigene0014980 Two-component response regulator-like APRR7 AT5G53420 20.5 39.0 209.9 90.9
 Unigene0011239 DA1-related protein 5 AT5G62580 18.6 26.4 38.4 29.5
Secondary metabolism
 Unigene0034150 GBR5 / 208.3 357.5 810.6 601.6
 Unigene0036783 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit AT4G38460 23.6 232.5 1157.4 282.1
Undefined
 Unigene0002182 Aspartate, glycine, lysine and serine-rich protein AT5G20190 29.0 118.0 207.9 403.3