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Table 1 Summary of the RNA-Seq data in three stages of ‘Dangshan Su’ fruit

From: Transcriptomic analysis of early fruit development in Chinese white pear (Pyrus bretschneideri Rehd.) and functional identification of PbCCR1 in lignin biosynthesis

ID

‘Dangshan Su’ fruit of 0 DAP

‘Dangshan Su’ fruit of 7 DAP

‘Dangshan Su’ fruit of 15 DAP

0 DAP-1

0 DAP-2

0 DAP-3

7 DAP-1

7 DAP-2

7 DAP-3

15 DAP-1

15 DAP-2

15 DAP-3

Total reads

50313188

53291526

51885204

35573064

31374310

38135470

45576288

40812768

45463438

Total mapped

40506401 (80.51%)

42693772 (80.11%)

41596368 (80.17%)

28379560 (79.78%)

25200858 (80.32%)

30434463 (79.81%)

36456831 (79.99%)

32775750 (80.31%)

36565932 (80.43%)

GC Content

48.27%

48.92%

49.11%

48.61%

48.42%

48.56%

48.78%

48.59%

48.40%

Q20a

98.45%

98.54%

98.43%

96.60%

96.74%

96.63%

96.64%

96.37%

96.49%

Q30b

94.63%

94.82%

94.65%

92.44%

92.60%

92.17%

92.13%

91.75%

92.05%

Mutiple mapped

9.76%

9.77%

9.71%

8.70%

8.74%

8.62%

8.42%

8.38%

8.35%

Uniquely mapped

70.75%

70.35%

70.46%

71.08%

71.25%

71.19%

71.90%

71.93%

72.08%

Reads map to ‘+’

35.49%

35.32%

35.37%

35.62%

35.71%

35.66%

35.97%

35.99%

36.06%

Reads map to ‘-’

35.26%

35.03%

35.09%

35.46%

35.55%

35.53%

35.92%

35.94%

36.02%

Non-splice reads

45.70%

44.71%

44.77%

45.50%

45.57%

45.44%

46.13%

46.15%

45.99%

Splice reads

25.05%

25.63%

25.69%

25.58%

25.69%

25.75%

25.77%

25.78%

26.09%