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Table 3 Transcription levels of 14 organellar genes and nuclear homologs in two G. hirsutum varieties

From: Intergenomic gene transfer in diploid and allopolyploid Gossypium

Organellar genes/ Nuclear homologiesDNA lengths (bp)RPKM value_X42aRPKM value_X11aSNP numbers
OrgDNANuDNAOrgDNANuDNAOrgDNANuDNA
atpE_cp/atpE_A09402402661.5671.191219.42165.736
ndhC_cp/ndhC_D0736336390.292.95177.013.4512
ndhE_cp/ndhE_A0130630627.380.0052.070.6522
ndhK_cp/ndhK_A10678678156.191.68257.033.5021
petG_cp/petG_D12114114129.931.18199.812.317
petL_cp/petL_D019696154.297.68378.5517.146
petN_cp/petN_D04909075.960.00112.650.005
psaJ_cp/psaJ_D02129129560.613.641214.125.616
psbE_cp/psbE_D06252252184.580.53230.420.2614
psbH_cp/psbH_A0522222263.708.15105.877.419
sdh4-mt/sdh4_D043993998.901.859.075.111
rps14-mt/rps14_A0130330325.440.0021.290.228
nad6-mt/nad6_A08/A03621621/6218.420.00/3.787.000.00/2.5433/1
cob-mt/cob_A01117911797.500.117.150.0027
  1. aRPKM values were calculated by RNA-seq data; X11 and X42 represented two G. hirsutum varieties, Xinluzao 11 and Xinluzhong 42