Table 3 Transcription levels of 14 organellar genes and nuclear homologs in two G. hirsutum varieties
From: Intergenomic gene transfer in diploid and allopolyploid Gossypium
Organellar genes/ Nuclear homologies | DNA lengths (bp) | RPKM value_X42a | RPKM value_X11a | SNP numbers | |||
|---|---|---|---|---|---|---|---|
OrgDNA | NuDNA | OrgDNA | NuDNA | OrgDNA | NuDNA | ||
atpE_cp/atpE_A09 | 402 | 402 | 661.56 | 71.19 | 1219.42 | 165.73 | 6 |
ndhC_cp/ndhC_D07 | 363 | 363 | 90.29 | 2.95 | 177.01 | 3.45 | 12 |
ndhE_cp/ndhE_A01 | 306 | 306 | 27.38 | 0.00 | 52.07 | 0.65 | 22 |
ndhK_cp/ndhK_A10 | 678 | 678 | 156.19 | 1.68 | 257.03 | 3.50 | 21 |
petG_cp/petG_D12 | 114 | 114 | 129.93 | 1.18 | 199.81 | 2.31 | 7 |
petL_cp/petL_D01 | 96 | 96 | 154.29 | 7.68 | 378.55 | 17.14 | 6 |
petN_cp/petN_D04 | 90 | 90 | 75.96 | 0.00 | 112.65 | 0.00 | 5 |
psaJ_cp/psaJ_D02 | 129 | 129 | 560.61 | 3.64 | 1214.12 | 5.61 | 6 |
psbE_cp/psbE_D06 | 252 | 252 | 184.58 | 0.53 | 230.42 | 0.26 | 14 |
psbH_cp/psbH_A05 | 222 | 222 | 63.70 | 8.15 | 105.87 | 7.41 | 9 |
sdh4-mt/sdh4_D04 | 399 | 399 | 8.90 | 1.85 | 9.07 | 5.11 | 1 |
rps14-mt/rps14_A01 | 303 | 303 | 25.44 | 0.00 | 21.29 | 0.22 | 8 |
nad6-mt/nad6_A08/A03 | 621 | 621/621 | 8.42 | 0.00/3.78 | 7.00 | 0.00/2.54 | 33/1 |
cob-mt/cob_A01 | 1179 | 1179 | 7.50 | 0.11 | 7.15 | 0.00 | 27 |