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Fig. 8 | BMC Plant Biology

Fig. 8

From: Intergenomic gene transfer in diploid and allopolyploid Gossypium

Fig. 8

RNA-seq expressed paired-end reads of chloroplast gene atpE_cp and its nuclear homology atpE_A09 in one G. hirsutum variety (Xinluzao 11). The two images above show the variability and coverage of the RNA-seq expressed paired-end reads via an Integrative Genomics Viewer (IGV) screenshot. Each image contains three main panels. The upper panel represents the sequence coordinates. The middle panel is subdivided into two tracks, where the upper track depicts read density and the lower track represents the mapped clean reads. The panel at the bottom represents the linear DNA sequence. The SNPs in atpE_A09 and the corresponding normal nucleotide acids in atpE_cp are highlighted in bold. The expressed reads of atpE_A09 share the same nucleotide acid sequences with atpE_cp and few expressed reads are mapped to the region of divergence

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