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Table 1 List of water deficit stress-regulated miRNAs detected in the primary root growth zone by small RNA-seq.

From: Water-deficit responsive microRNAs in the primary root growth zone of maize

miRNA ID

WW

R2

WW

R3

WW

R4

WW

R5

3R1

3R2

3R3

3R4

log2

FC

pvalue

FDR

 zma-miR399e, i, j-3p

13

9

7

4

108

80

100

99

3.39

1.1E-20

2.4E-18

 zma-miR396c, d

5661

6128

6194

6514

4653

4128

4336

4869

−0.422

7.2E-09

3.2E-07

 zma-miR319a-d-3p

5080

5210

5972

4920

3955

3519

3964

4135

−0.422

2.1E-08

7.6E-07

 zma-miR168b-3p

252

130

132

138

79

68

89

53

−1.188

9.0E-07

2.4E-05

 zma-miR408b-3p, a

405

313

486

418

202

206

186

254

−0.910

8.6E-07

2.4E-05

 zma-miR167e-j-5p

301

342

413

365

433

487

558

728

0.653

9.7E-06

1.7E-04

 zma-miR168a-3p

218

123

97

152

66

82

86

65

−0.985

4.9E-05

0.001

 zma-miR169c-3p

142

101

156

181

92

76

71

84

−0.807

0.001

0.006

 zma-miR169r-3p

4

6

0

7

0

0

0

0

−3.78

0.006

0.034

 zma-miR159c, d-3p

898

1000

1101

1038

1297

1208

1309

991

0.294

0.008

0.044

miRNA ID

WW

R2

WW

R3

WW

R4

WW

R5

16

R1

16

R2

16

R3

16

R4

log2

FC

pvalue

FDR

 zma-miR396c, d

5661

6128

6194

6514

2446

3064

2597

3271

−0.877

6.7E-32

4.8E-30

 zma-miR319a-d-3p

5080

5210

5972

4920

2443

2542

2257

2747

−0.855

1.1E-28

6.0E-27

 zma-miR393b-3p

79

120

94

74

355

331

316

376

2.14

2.7E-23

9.6E-22

 zma-miR167e-j-5p

301

342

413

365

609

760

736

772

1.26

1.1E-17

2.5E-16

 zma-miR390a, b-5p

571

826

944

786

309

274

251

287

−1.23

3.4E-17

6.1E-16

 zma-miR393a, c-5p

67

57

73

35

193

257

148

270

2.07

5.8E-17

9.5E-16

 zma-miR393b-5p

67

57

73

35

186

257

141

265

2.04

1.9E-16

2.4E-15

 zma-miR408b-3p, a

405

313

486

418

75

109

135

142

−1.56

1.7E-15

2.0E-14

 zma-miR168b-3p

252

130

132

138

50

66

34

84

−1.34

8.6E-08

8.4E-07

 zma-miR319b, d-5p

441

361

465

429

152

251

200

212

−0.832

2.1E-06

1.8E-05

 zma-miR166a-3p

313,450

360,388

352,629

343,981

222,704

272,440

228,770

225,716

−0.296

2.5E-05

1.9E-04

 zma-miR444a, b

36

35

35

53

50

109

63

86

1.17

3.6E-05

2.6E-04

 zma-miR399e, i, j-3p

13

9

7

4

23

17

17

59

1.82

3.8E-05

2.7E-04

 zma-miR8155

182

152

292

262

102

89

93

148

−0.791

2.1E-04

0.001

 zma-miR166a-5p

160

136

174

124

59

83

61

72

−0.895

2.7E-04

0.002

 zma-miR5139

180

152

302

266

107

89

95

156

−0.759

3.5E-04

0.002

 zma-miR156a-i, l-5p

1487

1671

1632

1672

1491

1922

1808

1658

0.327

4.3E-04

0.002

 zma-miR390a, b-3p

31

32

31

50

16

14

11

8

−1.27

0.002

0.008

 zma-miR166c-5p, e

187

142

142

213

86

111

93

61

−0.721

0.002

0.009

 zma-miR169c-3p

142

101

156

181

66

106

57

67

−0.750

0.002

0.010

 zma-miR396a, b-3p

112

114

108

78

30

71

46

61

−0.797

0.003

0.011

 zma-miR827-3p

319

320

274

333

134

220

165

217

−0.549

0.003

0.012

 zma-miR169f-5p, g, h

31

28

35

57

18

14

13

11

−1.13

0.004

0.015

 zma-miR167c-3p

4

13

3

0

0

0

0

0

−3.99

0.005

0.018

 zma-miR156h-3p

58

79

73

60

23

40

38

31

−0.800

0.006

0.021

 zma-miR399a, c, h-3p

34

32

17

18

5

9

8

17

−1.240

0.007

0.026

 zma-miR156i-3p

9

0

3

4

0

0

0

0

−3.77

0.008

0.028

 zma-miR156a-3p

11

9

3

4

16

31

17

8

1.45

0.009

0.030

 zma-miR167e-3p

29

16

31

32

55

46

25

42

0.837

0.010

0.032

 zma-miR167a-d-5p

54

47

45

57

57

86

65

72

0.670

0.014

0.045

 zma-miR398b-5p

58

73

69

106

25

31

59

42

−0.670

0.015

0.048

  1. miRNAs that were differentially regulated by mild water-deficit stress (FDR <0.05) are listed first followed by miRNAs differentially regulated by severe water-deficit stress (FDR <0.05). The miRNA abundance in each library is represented in RPTM. WWR2-WWR5 are libraries constructed from primary root growth zone RNA under well-watered conditions, 3R1-3R4 from mild water deficit-stressed, and 16R1-16R4 severe mild deficit-stressed treatments. The log2FC, p-value, and false discovery rate (FDR) were calculated with EdgeR