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Table 2 Top highest genome-wide significant association signals of RRE using MLM

From: Mining candidate gene for rice aluminum tolerance through genome wide association study and transcriptomic analysis

TraitChr.Position (IRGSP-1.0)Reference alleleAlternative alleleAlternative allele frequency-log10(P)Candidate/known genea
RRE110,953,291CT0.875.58LOC_Os01g19360.1
214,694,840AG0.855.04 
334,440,793AT0.885.45LOC_Os03g60610.1
67,814,182AG0.735.24 
67,814,184CT0.745.24 
67,814,207CT0.755.06 
616,451,901TC0.865.02LOC_Os06g28860.1
818,696,483TC0.675.11 
82,885,626AG0.635.10LOC_Os08g05440.1
82,885,642AT0.615.04 
919,838,960GA0.885.99 
1010,133,350TC0.585.30LOC_Os10g20180.1
108,299,577TC0.715.03 
  1. Note: aGene ID of MSU rice genome annotation project (http://rice.plantbiology.msu.edu/)