Transcriptome analysis and identification of genes associated with fruiting branch internode elongation in upland cotton

Ju, Feiyan; Liu, Shaodong; Zhang, Siping; Ma, Huijuan; Chen, Jing; Ge, Changwei; Shen, Qian; Zhang, Xiaomeng; Zhao, Xinhua; Zhang, Yongjiang; Pang, Chaoyou

doi:10.1186/s12870-019-2011-8

Table 2 Important genes and their predicted functions in the internode elongation of fruiting branches in cotton

From: Transcriptome analysis and identification of genes associated with fruiting branch internode elongation in upland cotton

Gene ID	L-1_fpkm	L-2_fpkm	L-3_fpkm	X-1_fpkm	X-2_fpkm	X-3_fpkm	Description	Predicted Function	Reference
Gh_A03G0871	140.59	123.31	174.71	288.19	307.84	312.05	Sphingoid base hydroxylase 2	Inhibition of growth, Promote apoptosis	Chen M et al., 2008 [13]
Gh_D02G1254	51.05	42.47	73.17	193.67	193.92	168.60	Sphingoid base hydroxylase 2	Inhibition of growth, Promote apoptosis	Chen M et al., 2008 [13]
Gh_D02G1253	26.06	4.56	3.80	64.51	24.95	22.93	Sphingoid base hydroxylase 2	Inhibition of growth, Promote apoptosis	Chen M et al., 2008 [13]
Gh_D09G0602	56.28	47.55	51.27	109.19	97.56	71.71	Kinase-13A	Inhibition of cell expansion	Fujikura U et al., 2014 [14]
Gh_D09G0602	56.28	47.55	51.27	109.19	97.56	71.71	Kinase-13A	Inhibition of cell cell size	Li YJ et al., 2017 [15]
Gh_A11G3137	4.98	2.37	7.81	10.01	10.12	3.79	Protein-tyrosine phosphatase-like, PTPLA	Inhibition of cell division	Bach L et al., 2008 [16]
Gh_A05G1579	23.01	28.32	29.73	24.85	28.62	57.19	Cinnamyl alcohol dehydrogenase 9	Lignin accumulation	Mansell RL et al., 2014 [17]
Gh_A10G1518	14.25	16.39	79.99	12.18	20.41	209.74	Chitinase-like protein 2	Accelerate secondary metabolism	Hossain MA et al., 2010 [18]
Gh_D10G1769	11.60	13.33	67.11	7.79	14.97	144.79	Chitinase-like protein 2	Accelerate secondary metabolism	Hossain MA et al., 2010 [18]
Gh_A11G2936	14.46	20.28	55.22	7.95	9.54	40.63	Laccase/diphenol oxidase family protein	Promotion of lignin decomposition	Berthet S et al., 2011 [19]
Gh_D03G1128	19.76	29.29	52.91	20.38	28.83	47.27	Laccase/diphenol oxidase family protein	Promotion of lignin decomposition	Zhao Q et al., 2013 [20]
Gh_D09G2057	21.45	62.35	73.01	33.54	70.74	107.94	Malectin/receptor-like protein Kinase family protein	Protoplast alkalization	Barbez E et al., 2017 [21]
Gh_D10G0981	237.30	215.92	111.36	116.78	90.66	36.42	Histone superfamily protein	Promoting cell division	Günesdogan U et al., 2014 [22]
Gh_A08G2114	202.08	170.28	81.50	94.56	62.85	30.06	Histone superfamily protein	Promoting cell proliferation	Günesdogan U et al., 2014 [22]
Gh_A13G0050	127.76	214.03	257.34	121.15	156.57	118.64	Expansin A8	Promote cell loosening and expansion	Nardi CF et al., 2014 [23]
Gh_D13G0060	196.61	288.97	352.52	199.21	232.59	172.40	Expansin A8	Promote cell loosening and expansion	Nardi CF et al., 2014 [23]
Gh_D01G0964	47.14	51.81	75.14	36.00	37.19	32.03	Walls Are Thin 1	Promoting cell elongation	Ranocha P et al., 2010 [24]
Gh_A01G0922	36.58	39.66	58.01	24.81	25.32	28.10	Walls Are Thin 1	Promoting cell elongation	Ranocha P et al., 2010 [24]
Gh_A03G1432	102.22	86.74	92.84	53.86	58.35	44.55	Xyloglucan endotransglucosylase/hydrolase 9	Promoting cell proliferation and elongation	Shin YK et al., 2006 [25]
Gh_A13G0500	39.81	26.30	26.26	13.99	14.66	12.00	Xyloglucan endotransglucosylase/hydrolase 9	Promoting cell proliferation and elongation	Shin YK et al., 2006 [25]

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