Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato

Table 3 QTLs for heat injury index detected by QTL-seq

CH	QTL^a	Chromosome Location(Mb)^b		Interval (Mb)^c	SNP-index of HTB^d		SNP-index of HSB^e
CH	QTL^a	Start	End	Interval (Mb)^c	Mean	Maximum	Mean	Minimum
chr1	*qHII-1-1*	23.80	25.23	1.43	0.97	1	0.38	0
chr1	*qHII-1-2*	26.83	28.00	1.17	1	1	0.40	0.29
chr1	*qHII-1-3*	62.33	63.52	1.19	0.6	1	0.15	0
chr2	*qHII-2-1*	38.98	40.85	1.87	1	1	0.42	0.33
chr7	qHII-7-1	10.08	11.56	1.48	1	1	0	0
chr7	qHII-7-2	12.11	13.49	1.38	1	1	0	0
chr7	qHII-7-3	21.94	23.08	1.14	1	1	0.4	0.4
chr7	qHII-7-4	24.79	26.90	2.11	0.9	1	0.23	0
chr7	qHII-7-5	36.83	38.82	1.99	1	1	0.32	0
chr7	qHII-7-6	40.45	42.44	1.99	0.6	0.6	0	0
chr7	qHII-7-7	45.75	46.88	1.13	0.86	1	0.23	0
chr7	qHII-7-8	50.87	52.20	1.33	1	1	0.32	0

The consistent intervals observed with conventional QTL mapping and QTL-seq are shown in bold
^athe QTLs for HII are temporarily named ‘qHII (Heat injury index) + number of chromosome + number of QTL’
^bThe Physical position of QTLs for HII
^cThe interval (Mb) of QTLs related to HII
^dThe mean and maximum value of SNP-index in HTB
^eThe mean and minimum value of SNP-index in HSB

ISSN: 1471-2229