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Fig. 5 | BMC Plant Biology

Fig. 5

From: Transcriptomic and phosphoproteomic profiling and metabolite analyses reveal the mechanism of NaHCO3-induced organic acid secretion in grapevine roots

Fig. 5

The distribution of differentially phosphorylated proteins (a, b) and significantly enriched phosphorylated sites (c). The 197 phosphorylated proteins were classified according to their biological process, cellular component, molecular function and subcellular location (a, b). The Gene Ontology (GO) annotation proteome was derived from the UniProt-GOA database (www. http://www.ebi.ac.uk/GOA/). Soft motif-x was used to analyze the model of sequences constituted with amino acids in specific positions of modify-21-mers (10 amino acids upstream and downstream of the site, but phosphorylation with modified-13-mers was 6 amino acids upstream and downstream of the site) in all protein sequences. All of the database protein sequences were used as background database parameters and other parameters with default

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