Table 6 List of DEGs related to salt stress response identified in G2-S4 vs G2-S3 comparison
From: RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress
Cluster | Database description | Identity score | Identity Evalue | log2 fold change |
|---|---|---|---|---|
Salt sensory and signaling mechanisms | ||||
14027.81324 | Setaria italica probable cation transporter HKT9 (Nr ID: XP_004967240.1) | 65.10% | 5e-142 | + 25.926 |
Transcription factors | ||||
14027.184776 | Setaria italica trihelix transcription factor GTL1 (Nt ID: XM_012842882.1) | 80.41% | 2e-69 | + 29.515 |
Hormone regulation of salt stress response | ||||
14027.238560 | Zea mays 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic (Swissprot ID: O24592) | 85.48% | 6e-177 | − 18.703 |
14027.234358 | Setaria italica abscisic acid 8′-hydroxylase 3 (Nr ID: XP_004957014.1) | 70.33% | 4e-163 | + 23.595 |
14027.36785 | Setaria italica brassinosteroid-6-oxidase 2 cytochrome P450 85A1 (KO ID: K12640) | 93.12% | 2e-105 | + 24.019 |
ROS scavenging regulatory mechanisms | ||||
14027.104252 | Flaveria pringlei NADP-dependent malic enzyme, chloroplastic (Swissprot ID: P36444) | 70.49% | 5e-135 | Infa |
14027.141579 | Setaria italica ubiquinol oxidase 2, mitochondrial-like (AOX) (Nr ID: XP_004953576.1) | 80.65% | 4e-87 | + 13.511 |
14027.159513 | Zea Mays superoxide dismutase [Cu-Zn] (Swissprot ID: P23345) | 89.67% | 2e-164 | + 11.777 |
14027.172733 | Setaria italica superoxide dismutase [Fe] 1, chloroplastic-like (Nt ID: XM_004981985.2) | 72.96% | 1e-165 | − 11.799 |
Osmolyte biosynthesis | ||||
14027.166473 | Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS) (Nt ID: XM_004970516.2) | 95.94% | 8e-175 | + 44.106 |
14027.197137 | Brachypodium distachyon delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (P5CSDH) (Nr ID: XP_010231104.1) | 92.46% | 5e-138 | + 17.324 |
14027.116788 | Oryza sativa subsp. japonica Betaine aldehyde dehydrogenase 1 (BADH) (Swissprot ID: O24174) | 85.80% | 2e-94 | + 16.655 |
14027.196396 | Oryza sativa Japonica Group Arginine decarboxylase 1 (ADC) (Nr ID: XP_015643038.1) | 92.73% | 1e-142 | + 18.455 |
Photosynthesis and photorespiration | ||||
14027.157747 | Oryza sativa subsp. japonica Group Ribulose bisphosphate carboxylase small chain A (Swissprot ID: Q0INY7) | 94.59% | 3e-20 | − 13.548 |
14027.70510 | Adiantum capillus-veneris ribulose-bisphosphate carboxylase large subunit (rbcL) (Swissprot ID: P36476) | 94.33% | 9e-180 | − 13.342 |
14027.168328 | Setaria italica ribulose bisphosphate carboxylase/oxygenase activase (Nt ID: XM_004960085.2) | 80.30% | 4e-66 | − 10.404 |
14027.153211 | Oryza sativa subsp. japonica chloroplastic pyruvate phosphate dikinase 1 (PPDK1) (Swissprot ID: Q6AVA8) | 88.41% | 1e-163 | + 28.312 |
14027.170986 | Setaria italica phosphoenolpyruvate carboxylase kinase (PEPC kinase) (Nt ID: XM_004953094.3) | 83.33% | 7e-05 | − 17.751 |
Biomass digestibility and biofuel production | ||||
14027.76193 | Setaria italica cinnamyl alcohol dehydrogenase (Nt ID: XM_004951572.2) | 82.35% | 2e-132 | − 11.287 |
14027.238308 | Setaria italica triacylglycerol lipase SDP1-like (Nr ID: XP_004970049.1) | 75.07% | 4e-168 | + 10.139 |