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Table 6 List of DEGs related to salt stress response identified in G2-S4 vs G2-S3 comparison

From: RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress

Cluster Database description Identity score Identity Evalue log2 fold change
Salt sensory and signaling mechanisms
 14027.81324 Setaria italica probable cation transporter HKT9
(Nr ID: XP_004967240.1)
65.10% 5e-142 + 25.926
Transcription factors
 14027.184776 Setaria italica trihelix transcription factor GTL1
(Nt ID: XM_012842882.1)
80.41% 2e-69 + 29.515
Hormone regulation of salt stress response
 14027.238560 Zea mays 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic (Swissprot ID: O24592) 85.48% 6e-177 − 18.703
 14027.234358 Setaria italica abscisic acid 8′-hydroxylase 3
(Nr ID: XP_004957014.1)
70.33% 4e-163 + 23.595
 14027.36785 Setaria italica brassinosteroid-6-oxidase 2 cytochrome P450 85A1 (KO ID: K12640) 93.12% 2e-105 + 24.019
ROS scavenging regulatory mechanisms
 14027.104252 Flaveria pringlei NADP-dependent malic enzyme, chloroplastic (Swissprot ID: P36444) 70.49% 5e-135 Infa
 14027.141579 Setaria italica ubiquinol oxidase 2, mitochondrial-like (AOX)
(Nr ID: XP_004953576.1)
80.65% 4e-87 + 13.511
 14027.159513 Zea Mays superoxide dismutase [Cu-Zn]
(Swissprot ID: P23345)
89.67% 2e-164 + 11.777
 14027.172733 Setaria italica superoxide dismutase [Fe] 1, chloroplastic-like (Nt ID: XM_004981985.2) 72.96% 1e-165 − 11.799
Osmolyte biosynthesis
 14027.166473 Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS) (Nt ID: XM_004970516.2) 95.94% 8e-175 + 44.106
 14027.197137 Brachypodium distachyon delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial (P5CSDH) (Nr ID: XP_010231104.1) 92.46% 5e-138 + 17.324
 14027.116788 Oryza sativa subsp. japonica Betaine aldehyde dehydrogenase 1 (BADH)
(Swissprot ID: O24174)
85.80% 2e-94 + 16.655
 14027.196396 Oryza sativa Japonica Group Arginine decarboxylase 1 (ADC)
(Nr ID: XP_015643038.1)
92.73% 1e-142 + 18.455
Photosynthesis and photorespiration
 14027.157747 Oryza sativa subsp. japonica Group Ribulose bisphosphate carboxylase small chain A
(Swissprot ID: Q0INY7)
94.59% 3e-20 − 13.548
 14027.70510 Adiantum capillus-veneris ribulose-bisphosphate carboxylase large subunit (rbcL)
(Swissprot ID: P36476)
94.33% 9e-180 − 13.342
 14027.168328 Setaria italica ribulose bisphosphate carboxylase/oxygenase activase
(Nt ID: XM_004960085.2)
80.30% 4e-66 − 10.404
 14027.153211 Oryza sativa subsp. japonica chloroplastic pyruvate phosphate dikinase 1 (PPDK1)
(Swissprot ID: Q6AVA8)
88.41% 1e-163 + 28.312
 14027.170986 Setaria italica phosphoenolpyruvate carboxylase kinase (PEPC kinase) (Nt ID: XM_004953094.3) 83.33% 7e-05 − 17.751
Biomass digestibility and biofuel production
 14027.76193 Setaria italica cinnamyl alcohol dehydrogenase
(Nt ID: XM_004951572.2)
82.35% 2e-132 − 11.287
 14027.238308 Setaria italica triacylglycerol lipase SDP1-like
(Nr ID: XP_004970049.1)
75.07% 4e-168 + 10.139
  1. ait means that the read count value of CK samples is zero