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Table 4 List of DEGs related to salt stress response identified in G2-S3 vs G2-CK comparison

From: RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress

Cluster ID Database description Percent identity Evalue log2 fold change
Salt sensory and signaling mechanisms
 14027.182899 Oryza sativa subsp. japonica Group CBL-interacting protein kinase 1 (CIPK1-SOS2 like), (XM_015766590.1) 93.33% 4e-23 + 39.581
 14027.54233 Setaria italica probable cation transporter HKT9 (XM_004967183.2) 86.32% 1e-132 + 18.352
 14027.155903 Phragmites australis pcnhx1 mRNA for putative Na+/H+ antiporter (NHX1), (Nt ID: AB211145.1) 93.40% 3e-54 − 21.136
 14027.181583 Arabidopsis thaliana Sodium/hydrogen exchanger 2 (NHX2), (Swissprot ID: Q56XP4) 77.78% 8e-79 − 19.411
Transcription factors
 14027.152638 Setaria italica protein TIFY 10B-like (Nr ID: XP_004958300.1) 84.77% 2e-131 − 25.354
 14027.159286 Setaria italica trihelix transcription factor GTL1 (Nt ID: XM_012842882.1) 88.89% 2e-101 + 14.963
 14027.107730 Panicum miliaceum ABSCISIC ACID-INSENSITIVE 5-like protein 7
(Nr ID: RLM78209.1)
78.41% 4e-93 + 15.107
Hormone regulation of salt stress response
 14027.74861 Triticum urartu Abscisic acid 8′-hydroxylase 1
(Nr ID: EMS68885.1)
85.54% 4e-112 + 47.347
 14027.144393 Setaria italica abscisic acid receptor PYL8
(Nt ID: XM_004951229.2).
77.85% 4e-80 + 11.825
 14027.137264 Setaria italica abscisic acid receptor PYR1-like
(Nr ID: XP_004983564.1)
85.34% 1e-104 + 12.624
 14027.173535 Oryza sativa serine/threonine-protein kinase SnRK (SnRK), (Swissprot ID: Q75H77) 79.69% 8e-32 + 14.238
 14027.235757 Setaria italica probable protein phosphatase 2C 30
(Nt ID: XM_004984868.2)
87.80% 6e-170 + 27.333
 14027.228612 Setaria italica cytochrome P450 734A1
(Nr ID: XP_004962129.1)
89.90% 2e-58 + 16.547
 14027.99729 Saccharum arundinaceum 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase)
(Nr ID: ABM74187.1)
91.46% 1e-122 + 15.804
 14027.265476 Setaria italica indole-3-pyruvate monooxygenase YUCCA2-like (Nr ID: XP_004967465.1) 75.33% 1e-107 − 40.837
ROS scavenging regulatory mechanisms
 14027.179813 Setaria italica L-ascorbate peroxidase
(Nt ID: XM_004984762.3)
92.70% 2e-67 + 17.074
 14027.36507 Zea mays glutathione transferase 23 (GST)
(Swissprot ID: Q9FQA3)
86.94% 1e-142 + 14.004
 14027.206288 Setaria italica NADP-dependent malic enzyme, chloroplastic (Nr ID: XP_004960887.1) 99.50% 4e-152 + 15.008
 14027.147540 Setaria italica malate dehydrogenase, mitochondrial (MDH), (Nt ID: XM_004961089.3) 84.14% 2e-167 + 12.416
Osmolyte biosynthesis
 14027.146844 Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS), (Nt ID: XM_004961829.3) 91.92% 6e-168 + 40.924
 14027.163839 Setaria italica proline dehydrogenase (PDH)
(Nt ID: XM_004983669.2)
89.55% 3e-114 − 28.271
 14027.196396 Oryza sativa Japonica Group Arginine decarboxylase 1 (ADC)
(Nr ID: XP_015643038.1)
92.73% 1e-142 + 46.553
Photosynthesis and photorespiration
 14027.153819 Pisum sativum RuBisCO large subunit-binding protein subunit alpha, chloroplastic
(Swissprot ID: P08926)
74.89% 4e-110 − 35.119
 14027.193818 Setaria italica peroxisomal (S)-2-hydroxy-acid oxidase
(Nt ID: XM_004958250.2)
92.51% 5e-156 + 22.634
Biomass digestibility and biofuel production
 14027.274380 Setaria italica cinnamoyl-CoA reductase 2-like
(Nt ID: XP_004956337.1)
67.31% 3e-149 + 39.522
 14027.178971 Zea mays caffeoyl CoA 3-O-methyltransferase
(Nr ID: AAP33129.1)
91.10% 6e-163 + 13.644
 14027.116333 Setaria italica sucrose synthase
(Nr ID: XP_004984440.1)
70.19% 2e-136 + 11.104
 14027.238308 Setaria italica triacylglycerol lipase SDP1-like
(Nr ID: XP_004970049.1)
78.83% 6e-112 + 10.393
 14027.166055 Setaria italica diacylglycerol kinase 1
(Nr ID: XP_004983987.1)
86.87% 2e-146 − 15.699