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Table 4 List of DEGs related to salt stress response identified in G2-S3 vs G2-CK comparison

From: RNASeq analysis of giant cane reveals the leaf transcriptome dynamics under long-term salt stress

Cluster ID

Database description

Percent identity

Evalue

log2 fold change

Salt sensory and signaling mechanisms

 14027.182899

Oryza sativa subsp. japonica Group CBL-interacting protein kinase 1 (CIPK1-SOS2 like), (XM_015766590.1)

93.33%

4e-23

+ 39.581

 14027.54233

Setaria italica probable cation transporter HKT9 (XM_004967183.2)

86.32%

1e-132

+ 18.352

 14027.155903

Phragmites australis pcnhx1 mRNA for putative Na+/H+ antiporter (NHX1), (Nt ID: AB211145.1)

93.40%

3e-54

− 21.136

 14027.181583

Arabidopsis thaliana Sodium/hydrogen exchanger 2 (NHX2), (Swissprot ID: Q56XP4)

77.78%

8e-79

− 19.411

Transcription factors

 14027.152638

Setaria italica protein TIFY 10B-like (Nr ID: XP_004958300.1)

84.77%

2e-131

− 25.354

 14027.159286

Setaria italica trihelix transcription factor GTL1 (Nt ID: XM_012842882.1)

88.89%

2e-101

+ 14.963

 14027.107730

Panicum miliaceum ABSCISIC ACID-INSENSITIVE 5-like protein 7

(Nr ID: RLM78209.1)

78.41%

4e-93

+ 15.107

Hormone regulation of salt stress response

 14027.74861

Triticum urartu Abscisic acid 8′-hydroxylase 1

(Nr ID: EMS68885.1)

85.54%

4e-112

+ 47.347

 14027.144393

Setaria italica abscisic acid receptor PYL8

(Nt ID: XM_004951229.2).

77.85%

4e-80

+ 11.825

 14027.137264

Setaria italica abscisic acid receptor PYR1-like

(Nr ID: XP_004983564.1)

85.34%

1e-104

+ 12.624

 14027.173535

Oryza sativa serine/threonine-protein kinase SnRK (SnRK), (Swissprot ID: Q75H77)

79.69%

8e-32

+ 14.238

 14027.235757

Setaria italica probable protein phosphatase 2C 30

(Nt ID: XM_004984868.2)

87.80%

6e-170

+ 27.333

 14027.228612

Setaria italica cytochrome P450 734A1

(Nr ID: XP_004962129.1)

89.90%

2e-58

+ 16.547

 14027.99729

Saccharum arundinaceum 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase)

(Nr ID: ABM74187.1)

91.46%

1e-122

+ 15.804

 14027.265476

Setaria italica indole-3-pyruvate monooxygenase YUCCA2-like (Nr ID: XP_004967465.1)

75.33%

1e-107

− 40.837

ROS scavenging regulatory mechanisms

 14027.179813

Setaria italica L-ascorbate peroxidase

(Nt ID: XM_004984762.3)

92.70%

2e-67

+ 17.074

 14027.36507

Zea mays glutathione transferase 23 (GST)

(Swissprot ID: Q9FQA3)

86.94%

1e-142

+ 14.004

 14027.206288

Setaria italica NADP-dependent malic enzyme, chloroplastic (Nr ID: XP_004960887.1)

99.50%

4e-152

+ 15.008

 14027.147540

Setaria italica malate dehydrogenase, mitochondrial (MDH), (Nt ID: XM_004961089.3)

84.14%

2e-167

+ 12.416

Osmolyte biosynthesis

 14027.146844

Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS), (Nt ID: XM_004961829.3)

91.92%

6e-168

+ 40.924

 14027.163839

Setaria italica proline dehydrogenase (PDH)

(Nt ID: XM_004983669.2)

89.55%

3e-114

− 28.271

 14027.196396

Oryza sativa Japonica Group Arginine decarboxylase 1 (ADC)

(Nr ID: XP_015643038.1)

92.73%

1e-142

+ 46.553

Photosynthesis and photorespiration

 14027.153819

Pisum sativum RuBisCO large subunit-binding protein subunit alpha, chloroplastic

(Swissprot ID: P08926)

74.89%

4e-110

− 35.119

 14027.193818

Setaria italica peroxisomal (S)-2-hydroxy-acid oxidase

(Nt ID: XM_004958250.2)

92.51%

5e-156

+ 22.634

Biomass digestibility and biofuel production

 14027.274380

Setaria italica cinnamoyl-CoA reductase 2-like

(Nt ID: XP_004956337.1)

67.31%

3e-149

+ 39.522

 14027.178971

Zea mays caffeoyl CoA 3-O-methyltransferase

(Nr ID: AAP33129.1)

91.10%

6e-163

+ 13.644

 14027.116333

Setaria italica sucrose synthase

(Nr ID: XP_004984440.1)

70.19%

2e-136

+ 11.104

 14027.238308

Setaria italica triacylglycerol lipase SDP1-like

(Nr ID: XP_004970049.1)

78.83%

6e-112

+ 10.393

 14027.166055

Setaria italica diacylglycerol kinase 1

(Nr ID: XP_004983987.1)

86.87%

2e-146

− 15.699