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Table 1 Protein information, conserved amino acid residues, transmembrane domains (TMDs), and their predicated subcellular localization of Cucumis sativus aquaporins

From: Genome-wide identification, structure characterization, and expression pattern profiling of aquaporin gene family in cucumber

Name Gene ID aLength bMW cpI dGRAVY eTM Ar/R selectivity filter NPA motifs Froger’s positions fLoc
H2 H5 LE1 LE2 LB LE P1 P2 P3 P4 p5
CsPIP1;1 Csa5M199270.1 292 31.43 7.67 0.31 6 F H T R NPA NPA Q S A F W plas
CsPIP1;2a Csa5M198770.1 292 31.37 7.68 0.34 6 F H T R NPA NPA Q S A F W plas
CsPIP1;2b Csa5M198770.2 217 23.20 7.62 0.21 4 F / / / NPA / Q / / / / plas
CsPIP1;3 Csa5M153020.1 286 30.76 9.23 0.36 6 F H T R NPA NPA Q S A F W plas
CsPIP1;4 Csa5M199280.1 292 31.40 7.67 0.29 5 F H T R NPA NPA Q S A F W plas
CsPIP1;5 Csa6M445090.1 191 20.26 9.51 0.47 4 / N A R NPA NPA K S A F W plas
CsPIP1;6 Csa3M739030.1 290 31.25 9.10 0.49 6 F H T R NPA NPA Q S A F W plas
CsPIP2;1a Csa6M445130.1 284 29.92 7.04 0.51 6 F H T R NPA NPA Q S A F W plas
CsPIP2;1b Csa6M445130.2 208 21.92 6.18 0.45 4 F S / / NPA / Q / / / / plas
CsPIP2;2 Csa6M445120.1 284 30.24 8.78 0.56 6 F H T R NPA NPA Q S A F W plas
CsPIP2;3a Csa6M445140.1 284 29.98 7.64 0.56 7 F A F T NPA HLA Q I G F N plas
CsPIP2;3b Csa6M445140.2 208 21.93 6.26 0.56 4 F S / / NPA / Q / / / / plas
CsPIP2;4a Csa6M140850.1 283 30.24 7.63 0.47 6 F H T R NPA NPA Q S A F W plas
CsPIP2;4b Csa6M140850.2 252 26.85 6.06 0.47 5 F H T R NPA NPA Q S A S L plas
CsPIP2;5 Csa6M405320.1 276 29.37 9.36 0.53 6 F H T R NPA NPA Q S A F W plas
CsPIP2;6a Csa6M445150.1 279 29.72 8.97 0.62 6 F H T R NPA NPA Q S A F W plas
CsPIP2;6b Csa6M445150.2 197 20.96 9.75 0.69 5 F H T R NPA NPA Q S A F W plas
CsPIP2;7 Csa5M623360.1 287 30.52 9.11 0.41 6 F H T R NPA NPA Q S A F W plas
CsPIP2;8 Csa7M014450.1 280 29.85 9.24 0.45 6 F H T R NPA NPA M S A F W plas
CsTIP1;1 Csa6M448110.1 250 25.72 5.64 0.78 7 H I A V NPA NPA F A S Y W vacu
CsTIP1;2 Csa3M743400.1 253 26.29 6.03 0.93 7 H I A V NPA NPA F A A Y W vacu
CsTIP1;3 Csa5M505790.1 254 26.53 5.30 0.71 6 H I A V NPA NPA F T A Y W vacu
CsTIP2;1 Csa5M162580.1 250 25.09 5.39 0.99 6 H I G R NPA NPA F S A Y W plas
CsTIP2;2 Csa7M447100.1 248 25.44 5.66 0.87 6 H I G R NPA NPA Y S A Y W vacu
CsTIP3;1 Csa1M043290.1 289 30.66 7.17 0.46 5 H I A R NPA NPA L A S Y W vacu
CsTIP4;1 Csa2M374630.1 247 25.72 6.01 0.90 7 H I A R NPA NPA Y S A Y W vacu
CsTIP5;1 Csa5M168860.1 255 26.12 6.88 0.86 6 N V G C NPA NPA A A A Y W plas
CsNIP1;1 Csa6M520340.1 276 29.45 9.58 0.54 6 W V A R NPA NPA F S A Y I plas
CsNIP1;2 Csa3M345890.1 269 28.88 7.67 0.78 5 W V A R NPA NPA F S A Y M vacu
CsNIP2;1 Csa3M826640.1 288 30.55 9.40 0.33 6 G S G R NPA NPV L T A Y F vacu/plas
CsNIP2;2 Csa3M826650.1 261 27.62 6.05 0.45 6 C S G R NPA NPA M S A Y M plas
CsNIP3;1a Csa5M146200.1 249 26.01 8.86 0.65 4 A I G R NPS NPV F T A Y M plas
CsNIP3;1b Csa5M146200.2 221 23.51 8.50 0.74 6 A I / / NPS / F / / F l plas
CsNIP3;2 Csa5M146190.1 298 30.80 8.63 0.50 5 A I G R NPS NPV F A A Y l plas
CsNIP3;3 Csa4M007030.1 304 31.52 8.26 0.43 5 T V A R NPA NPV F T A Y l plas
CsNIP4;1 Csa3M149960.1 268 28.45 6.88 0.68 6 A V A R NPA NPA F S A Y I plas/vacu
CsSIP1;1 Csa4M192210.1 243 25.59 9.41 0.83 6 V T P N NPT NPA F A A Y W vacu
CsSIP2;1 Csa3M816140.1 238 25.93 10.00 0.66 5 F K G S NPL NPA F V A Y W vacu
CsXIP1;1 Csa2M263850.1 319 34.47 8.27 0.66 7 V I V R SPI SPA Y C A F W cyto
/ Csa6M445100.1 106 11.57 4.51 0.62 2 F / / / / / / / / / / plas
/ Csa7M336420.1 99 10.66 4.83 0.72 3 / / / / / / / / / / / mito
  1. aLength Protein length (aa)
  2. bMW Protein molecular weight (kD)
  3. cpI isoelectric point
  4. dGRAVY Grand average of hydrophobicity
  5. eTM represents for the numbers of Transmembrane helices predicted by TMHMM Server v.2.0 tool
  6. fBest possible cell localization predicted by the WoLF PSORT tool (Chlo Chloroplast, Cyto Cytosol, Plas Plasma membrane, Vacu Vacuolar membrane)
  7. LB Loop B, LE Loop E. NPA Asparagine-Proline-Alanine, H2 represents for Helix 2, H5 represents for Helix 5, LE1 represents for Loop E1, LE2 represents for Loop E2, Ar/R represents for Aromatic/Arginine