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Table 2 Enrichment of plant hormone and cell wall related gene ontology (GO) categories in each gene module

From: Genome-wide transcriptional adaptation to salt stress in Populus

GOBPID

P-value

Module

Term

Auxin

 GO:0009734

1.38E-07

green

auxin-activated signaling pathway

 GO:0009733

3.62E-07

green

response to auxin

 GO:0071365

4.58E-07

green

cellular response to auxin stimulus

 GO:0060918

0.001810948

green

auxin transport

 GO:0009926

0.002255868

green

auxin polar transport

 GO:0009926

0.006351523

pink

auxin polar transport

 GO:0060918

0.008487031

pink

auxin transport

 GO:0071365

0.000658331

turquoise

cellular response to auxin stimulus

 GO:0009734

0.003241714

turquoise

auxin-activated signaling pathway

 GO:0010540

0.00491535

turquoise

basipetal auxin transport

 GO:0009733

0.00886687

turquoise

response to auxin

Gibberellins

 GO:0010371

0.006713667

brown

regulation of gibberellin biosynthetic process

 GO:0009739

0.000443904

green

response to gibberellin

Cytokinin

 GO:0080037

0.001227355

blue

negative regulation of cytokinin-activated signaling pathway

 GO:0009735

0.000982346

turquoise

response to cytokinin

Brassinosteroid

 GO:0009741

0.00057973

green

response to brassinosteroid

Ethylene

 GO:0009723

4.79E-05

black

response to ethylene

 GO:0009873

0.000328341

black

ethylene-activated signaling pathway

 GO:0071369

0.000505744

black

cellular response to ethylene stimulus

 GO:0071369

4.95E-05

green

cellular response to ethylene stimulus

 GO:0009873

0.000260229

green

ethylene-activated signaling pathway

 GO:0009723

0.000263073

green

response to ethylene

 GO:0010105

3.66E-07

red

negative regulation of ethylene-activated signaling pathway

 GO:0010104

6.91E-06

red

regulation of ethylene-activated signaling pathway

Jasmonic acid

 GO:0009753

0.000493563

blue

response to jasmonic acid

 GO:2000022

0.001852248

blue

regulation of jasmonic acid mediated signaling pathway

 GO:0009867

0.002393932

blue

jasmonic acid mediated signaling pathway

 GO:0071395

0.00350308

blue

cellular response to jasmonic acid stimulus

 GO:0009694

0.000172051

green

jasmonic acid metabolic process

 GO:0009753

0.001153948

green

response to jasmonic acid

Abscisic acid

 GO:0009737

4.22E-06

blue

response to abscisic acid

 GO:0009738

0.00056742

blue

abscisic acid-activated signaling pathway

 GO:0071215

0.003692747

blue

cellular response to abscisic acid stimulus

Salicylic acid

 GO:0009862

6.20E-07

blue

systemic acquired resistance, salicylic acid mediated signaling pathway

 GO:0010337

0.001421978

blue

regulation of salicylic acid metabolic process

 GO:0009863

0.001776784

blue

salicylic acid mediated signaling pathway

 GO:0071446

0.002641471

blue

cellular response to salicylic acid stimulus

 GO:0009751

0.004901824

blue

response to salicylic acid

 GO:0046244

0.005445888

blue

salicylic acid catabolic process

Cell wall

 GO:0044036

0.00034442

blue

cell wall macromolecule metabolic process

 GO:0010383

0.001016966

blue

cell wall polysaccharide metabolic process

 GO:0071554

1.66E-07

green

cell wall organization or biogenesis

 GO:0042546

2.02E-06

green

cell wall biogenesis

 GO:0009834

5.04E-06

green

plant-type secondary cell wall biogenesis

 GO:0071669

8.26E-06

green

plant-type cell wall organization or biogenesis

 GO:0009832

0.000110576

green

plant-type cell wall biogenesis

 GO:1901347

0.000132263

green

negative regulation of secondary cell wall biogenesis

 GO:1903339

0.000132263

green

negative regulation of cell wall organization or biogenesis

 GO:0042545

0.000240471

green

cell wall modification

 GO:0009827

0.000539041

green

plant-type cell wall modification

 GO:0071555

0.002039367

green

cell wall organization

 GO:0009664

0.003032875

green

plant-type cell wall organization

 GO:0009828

0.006460053

green

plant-type cell wall loosening

 GO:0016998

0.004935135

pink

cell wall macromolecule catabolic process

 GO:0009664

0.008475018

red

plant-type cell wall organization

 GO:0071555

0.008547578

red

cell wall organization

 GO:0009833

0.000480169

turquoise

plant-type primary cell wall biogenesis

 GO:2000652

0.002143591

yellow

regulation of secondary cell wall biogenesis

 GO:0009809

2.82E-07

green

lignin biosynthetic process

 GO:0009808

4.08E-07

green

lignin metabolic process

 GO:0046274

1.47E-05

green

lignin catabolic process

 GO:0010410

0.008590021

blue

hemicellulose metabolic process

 GO:0045490

0.000254293

green

pectin catabolic process

 GO:0045488

0.001028476

green

pectin metabolic process