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Table 2 Enrichment of plant hormone and cell wall related gene ontology (GO) categories in each gene module

From: Genome-wide transcriptional adaptation to salt stress in Populus

GOBPID P-value Module Term
Auxin
 GO:0009734 1.38E-07 green auxin-activated signaling pathway
 GO:0009733 3.62E-07 green response to auxin
 GO:0071365 4.58E-07 green cellular response to auxin stimulus
 GO:0060918 0.001810948 green auxin transport
 GO:0009926 0.002255868 green auxin polar transport
 GO:0009926 0.006351523 pink auxin polar transport
 GO:0060918 0.008487031 pink auxin transport
 GO:0071365 0.000658331 turquoise cellular response to auxin stimulus
 GO:0009734 0.003241714 turquoise auxin-activated signaling pathway
 GO:0010540 0.00491535 turquoise basipetal auxin transport
 GO:0009733 0.00886687 turquoise response to auxin
Gibberellins
 GO:0010371 0.006713667 brown regulation of gibberellin biosynthetic process
 GO:0009739 0.000443904 green response to gibberellin
Cytokinin
 GO:0080037 0.001227355 blue negative regulation of cytokinin-activated signaling pathway
 GO:0009735 0.000982346 turquoise response to cytokinin
Brassinosteroid
 GO:0009741 0.00057973 green response to brassinosteroid
Ethylene
 GO:0009723 4.79E-05 black response to ethylene
 GO:0009873 0.000328341 black ethylene-activated signaling pathway
 GO:0071369 0.000505744 black cellular response to ethylene stimulus
 GO:0071369 4.95E-05 green cellular response to ethylene stimulus
 GO:0009873 0.000260229 green ethylene-activated signaling pathway
 GO:0009723 0.000263073 green response to ethylene
 GO:0010105 3.66E-07 red negative regulation of ethylene-activated signaling pathway
 GO:0010104 6.91E-06 red regulation of ethylene-activated signaling pathway
Jasmonic acid
 GO:0009753 0.000493563 blue response to jasmonic acid
 GO:2000022 0.001852248 blue regulation of jasmonic acid mediated signaling pathway
 GO:0009867 0.002393932 blue jasmonic acid mediated signaling pathway
 GO:0071395 0.00350308 blue cellular response to jasmonic acid stimulus
 GO:0009694 0.000172051 green jasmonic acid metabolic process
 GO:0009753 0.001153948 green response to jasmonic acid
Abscisic acid
 GO:0009737 4.22E-06 blue response to abscisic acid
 GO:0009738 0.00056742 blue abscisic acid-activated signaling pathway
 GO:0071215 0.003692747 blue cellular response to abscisic acid stimulus
Salicylic acid
 GO:0009862 6.20E-07 blue systemic acquired resistance, salicylic acid mediated signaling pathway
 GO:0010337 0.001421978 blue regulation of salicylic acid metabolic process
 GO:0009863 0.001776784 blue salicylic acid mediated signaling pathway
 GO:0071446 0.002641471 blue cellular response to salicylic acid stimulus
 GO:0009751 0.004901824 blue response to salicylic acid
 GO:0046244 0.005445888 blue salicylic acid catabolic process
Cell wall
 GO:0044036 0.00034442 blue cell wall macromolecule metabolic process
 GO:0010383 0.001016966 blue cell wall polysaccharide metabolic process
 GO:0071554 1.66E-07 green cell wall organization or biogenesis
 GO:0042546 2.02E-06 green cell wall biogenesis
 GO:0009834 5.04E-06 green plant-type secondary cell wall biogenesis
 GO:0071669 8.26E-06 green plant-type cell wall organization or biogenesis
 GO:0009832 0.000110576 green plant-type cell wall biogenesis
 GO:1901347 0.000132263 green negative regulation of secondary cell wall biogenesis
 GO:1903339 0.000132263 green negative regulation of cell wall organization or biogenesis
 GO:0042545 0.000240471 green cell wall modification
 GO:0009827 0.000539041 green plant-type cell wall modification
 GO:0071555 0.002039367 green cell wall organization
 GO:0009664 0.003032875 green plant-type cell wall organization
 GO:0009828 0.006460053 green plant-type cell wall loosening
 GO:0016998 0.004935135 pink cell wall macromolecule catabolic process
 GO:0009664 0.008475018 red plant-type cell wall organization
 GO:0071555 0.008547578 red cell wall organization
 GO:0009833 0.000480169 turquoise plant-type primary cell wall biogenesis
 GO:2000652 0.002143591 yellow regulation of secondary cell wall biogenesis
 GO:0009809 2.82E-07 green lignin biosynthetic process
 GO:0009808 4.08E-07 green lignin metabolic process
 GO:0046274 1.47E-05 green lignin catabolic process
 GO:0010410 0.008590021 blue hemicellulose metabolic process
 GO:0045490 0.000254293 green pectin catabolic process
 GO:0045488 0.001028476 green pectin metabolic process