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Table 8 Potential candidate genes identified through BLASTn searchin M. truncatula pseudomolecule using tag sequences of SNPs in the regions spanned by QTL for TOF, SY, and CSB mapped on linkage maps of two alfalfa parents 3010 and CW1010

From: QTL mapping of flowering time and biomass yield in tetraploid alfalfa (Medicago sativa L.)

Parent

QTL Code

Markers

Potential Candidate Genes Related Proteins

% Identity

E-value

M. truncatula Gene

3010

Tof-d1

TP66486

Myosin motor domain protein and Dil domain protein

98.36

4e-23

Medtr1g070400

3010

Tof-d2

TP60376

P-loop nucleoside triphosphate hydrolase superfamily protein

98.44

9e-25

Medtr1g075200

3010

Tof-d5

TP34483

Pre-mRNA splicing factor-like protein

100.00

2e-26

Medtr7g068630

3010

Tof-d6

TP36877

Chitinase

100.00

2e-26

Medtr1g099320

3010

Tof-d7

TP60221

Hypothetical protein

96.88

4e-23

Medtr8g064300

3010

Tof-d8

TP28256

U6 snRNA-associated-like-Smprotein

100.00

2e-26

Medtr8g058537

3010

Tof-d8

TP80202

Translational activator GCN1-like protein

100.00

2e-26

Medtr7g116425

3010

Tof-d9

TP3421

bZIP transcription factor

100.00

2e-26

Medtr7g088090

3010

Tof-d9

TP9376

Pre-mRNA-splicing factor SLU7-like protein

100.00

2e-26

Medtr7g096940

3010

Tof-d10

TP35274

Carbohydrate-binding X8 domain protein

96.88

4e-23

Medtr1g084820

3010

Tof-d10

TP995

Importin-like protein

96.43

1e-18

Medtr7g021500

3010

Tof-d11

TP23433

Exocyst complex component sec15B

98.44

9e-25

Medtr1g050505

3010

Tof-d12

TP53864

RNA-binding (RRM/RBD/RNP motif) family protein

95.3

2e-21

Medtr3g027140

3010

SY-d1

TP2592

LOB domain protein

96.88

4e-23

Medtr3g452660

3010

SY-d2

TP83334

Nudix hydrolase-like protein

98.44

9e-25

Medtr3g437740

3010

SY-d4

TP51377

RS2-interacting KH protein, putative

100.00

2e-26

Medtr7g013700

3010

SY-d4

TP47813

Peptide/nitrate transporter

98.44

9e-25

Medtr7g010820

3010

SY-d6

TP66942

Transcription factor

95.31

7e-21

Medtr7g092510

3010

SY-d7

TP14368

RING/U-box protein

96.88

4e-23

Medtr7g056183

3010

SY-d8

TP46942

Succinyl-CoA ligase [ADP-forming] subunit beta

100.00

2e-26

Medtr1g069645

3010

SY-d9

TP6511

Plastid transcriptionally active protein

100.00

2e-26

Medtr1g079525

3010

SY-d9

TP34670

Alpha/beta hydrolase family protein

96.72

2e-21

Medtr1g088470

3010

SY-d10

TP89308

Lon protease S16 carboxy-terminal proteolytic domain protein

95.24

7e-21

Medtr1g083990

3010

CSB-d2

TP32956

1-aminocyclopropane-1-carboxylate oxidase-like protein

100.00

2e-26

Medtr4g099390

3010

CSB-d2

TP83938

Phosphatase 2C family protein

98.39

1e-23

Medtr4g118340

3010

CSB-d3

TP27142

C2H2-type zinc finger protein, putative

96.88

4e-23

Medtr4g057230

CW 1010

Tof-n1

TP628

Aluminum activated malate transporter family protein

100

2e-26

Medtr5g014310

CW 1010

Tof-n1

TP47971

F-box/RNI/FBD-like domain protein

100

2e-26

Medtr5g012840

CW 1010

Tof-n5

TP24444

Cytochrome P450 family protein

96.88

4e-23

Medtr1g116890

CW 1010

Tof-n5

TP64001

Granule bound starch synthase

98.39

1e-23

Medtr6g012380

CW 1010

Tof-n5

TP32647

Pentatricopeptide (PPR) repeat protein

95.31

2e-21

Medtr6g022140

CW 1010

Tof-n6

TP45002

Group 1 family glycosyltransferase

100.00

2e-26

Medtr7g067340

CW 1010

Tof-n7

TP54614

Pre-mRNA splicing factor-like protein

98.44

9e-25

Medtr7g068630

CW 1010

Tof-n8

TP14107

Det1 complexing ubiquitin ligase

95.31

2e-21

Medtr7g091260

CW 1010

Tof-n11

TP25170

Polyol/monosaccharide transporter 1

100.00

2e-26

Medtr4g090600a

CW 1010

SY-n1

TP11255

CCCH-type zinc finger protein, putative

98.44

9e-25

Medtr3g464260

CW 1010

SY-n2

TP41903

Armadillo repeat only protein

100.00

2e-26

Medtr4g073830

CW 1010

SY-n3

TP25170

Polyol/monosaccharide transporter 1

100.00

2e-26

Medtr4g090600a

CW 1010

SY-n3

TP86491

Pentatricopeptide (PPR) repeat protein

100.00

2e-26

Medtr8g106950

CW 1010

SY-n4

TP27703

ATP-dependent helicase BRM

100.00

2e-26

Medtr8g030550

CW 1010

SY-n5

TP77807

Trafficking protein particle complex subunit-like protein

100.00

2e-26

Medtr8g027700

CW 1010

SY-n7

TP50516

Pyruvate decarboxylase

95.31

7e-21

Medtr7g069500

CW 1010

SY-n7

TP13897

ARM repeat protein

96.88

4e-23

Medtr7g075940

CW 1010

CSB-n1

TP10914

XS domain protein

98.44

9e-25

Medtr1g492940

CW 1010

CSB-n1

TP11572

Octicosapeptide/phox/Bem1p family protein

98.44

9e-25

Medtr1g109470

CW 1010

CSB-n1

TP42278

Hypothetical protein

96.88

4e-23

Medtr1g079830

CW 1010

CSB-n2

TP70955

60 kDa inner membrane protein

98.44

9e-25

Medtr4g107330

CW 1010

CSB-n3

TP26255

Endoribonuclease E-like protein

96.88

4e-23

Medtr5g030900

CW 1010

CSB-n3

TP18857

Homeobox domain protein

96.88

4e-23

Medtr2g014490

  1. The Tof-n11 is a flowering QTL and SY-n3 is a QTL for summer yield identified for the same CW 1010 parent
  2. TOF, SY, and CSB refer to the timing of flowering, spring yield, and cumulative summer biomass, respectively
  3. a potential candidate genes identified for corresponding SNP sequences of both QTL (Tof-n11 and SY-n3)