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Table 1 Differentially expressed (DE) genes in an Rpv3–1 cultivar undergoing a successful defense. Samples were collected 6 hpi with the avirulent (avrRpv3+) or virulent (avrRpv3ˉ) Plasmopara viticola isolate and water treatment. These eleven DE genes were identified by analyzing the interaction terms of Rpv3–1/avrRpv3+ (avrRpv3+ vs mock) vs susceptible (avrRpv3+ vs mock) and Rpv3–1/avrRpv3ˉ (avrRpv3ˉ vs mock) vs susceptible (avrRpv3+ vs mock) samples and represent genes that are differentially expressed only in the avirulent interaction (P < 0.1)

From: Rpv3–1 mediated resistance to grapevine downy mildew is associated with specific host transcriptional responses and the accumulation of stilbenes

Gene ID Functional annotation Rpv3-1/avrRpv3+ vs susceptible Rpv3-1/avrRpv3¯ vs susceptible
logFC adj. P value logFC adj. P value
VIT_04s0008g07150 Aspartyl protease 3390 0.098 1622 0.143
VIT_04s0008g07250 Aspartyl protease 2862 0.082 1417 0.102
VIT_12s0055g01000 Peroxidase 1666 0.095 –0.460 0.338
VIT_16s0098g01250 Metal-nicotianamine transporter YSL3 1600 0.082 0.311 0.435
VIT_10s0003g02120 Lipase GDSL 1570 0.082 –0.123 0.758
VIT_05s0062g01320 Chitinase 1069 0.095 0.566 0.103
VIT_14s0060g02120 Unknown –0.937 0.095 –0.382 0.181
VIT_04s0044g00170 MUTL protein homolog 3 (MLH3) –1,013 0.082 –0.491 0.105
VIT_05s0020g00290 Zinc knuckle family protein –1090 0.098 –0.312 0.330
VIT_12s0034g02570 Leucine Rich Repeat receptor-like kinase –1488 0.077 –0.528 0.154
VIT_18s0001g07610 Unknown –1616 0.095 –0.714 0.155