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Table 1 Significant (p < 0.0001) SNPs on chromosome 1A detected from the bulked-segregant analysis (BSA) in the Halberd*2/CM18 and Uruguay386*2/CM18 populations. Locations (_Loc; cM) from the 9 K [10] and 90 K [43] consensus maps are provided. NA = SNP not placed on consensus map

From: Increase in coleoptile length and establishment by Lcol-A1, a genetic locus with major effect in wheat

SNP Name

SNP ID

9K_Loc

90K_Loc

Halberd*2/CM18

 wsnp_Ku_c17726_26872129

IWA6636

51.12

71.05

 wsnp_Ex_c3253_5995011

IWA3399

54.28

NA

 wsnp_Ex_c6826_11774795

IWA4578

57.95

70.10

 wsnp_Ku_c3468_6420199

IWA6942

57.95

70.10

 wsnp_Ex_c3747_6824863

IWA3612

57.95

70.10

 wsnp_Ex_c8364_14095508

IWA4797

62.39

71.10

 wsnp_Ku_c37925_46679146

IWA6972

70.70

71.10

 wsnp_Ku_c33917_43336069

IWA6934

109.32

101.19

Uruguay386*2/CM18

 wsnp_Ex_c5323_9408829

IWA4163

35.82

51.09

 wsnp_Ku_c11896_19337444

IWA6441

39.00

NA

 wsnp_BE586140A_Ta_2_1

IWA360

40.65

55.18

 wsnp_Ex_c34821_43076533

IWA3499

51.12

71.48

 wsnp_Ex_c3253_5995011

IWA3339

54.28

NA

 wsnp_Ex_c2749_5091813

IWA3115

56.97

70.10

 wsnp_JD_rep_c49359_33578909

IWA6260.1

57.95

70.10

 wsnp_Ex_rep_c104050_88861052

IWA5109

57.95

70.10

 wsnp_Ra_c26956_36503468

IWA7804

57.95

70.10

 wsnp_Ex_c2389_4477096

IWA2847

57.95

70.10

 wsnp_Ex_c3142_5808330

IWA3338

64.39

70.10

 wsnp_BE518393A_Td_2_3

IWA352

64.39

70.10

 wsnp_Ex_rep_c66382_64577768

IWA5226

67.01

70.10

 wsnp_CAP11_c1029_611774

IWA639

68.32

70.10

 wsnp_Ku_rep_c71909_71634013

IWA7505

68.65

70.79