Table 1 Sequence variations of GBSSI-1 homoeologs in Rubus (excluding outgroups)
Region | Number of individuals | Number of sequences | Length range (bp) | Aligned nucleotide length (bp) | Variable sites (%) | Parsimony informative sites (%) |
|---|---|---|---|---|---|---|
GBSSI-1 | 140 | 195 | 760–1234 | 1325 | 583 (44.00%) | 366 (27.62%) |
GBSSI-1 intron | 140 | 195 | 482–858 | 938 | 436 (46.48%) | 273 (29.10%) |
GBSSI-1a | 83 | 118 | 1139–1234 | 1296 | 441 (34.03%) | 257 (19.83%) |
GBSSI-1a intron | 83 | 118 | 763–858 | 917 | 340 (37.08%) | 192 (20.94%) |
GBSSI-1a intron 4 | 83 | 118 | 403–484 | 517 | 188 (36.36%) | 106 (20.50%) |
GBSSI-1b | 58 | 72 | 942–1001 | 1028 | 234 (22.76%) | 134 (13.04%) |
GBSSI-1b intron | 58 | 72 | 563–621 | 641 | 170 (26.52%) | 98 (15.29%) |
GBSSI-1b intron 4 | 58 | 72 | 191–249 | 252 | 65 (25.79%) | 34 (13.49%) |
GBSSI-1c | 5 | 5 | 760–822 | 913 | 11 (1.20%) | – |