The LsVe1L allele provides a molecular marker for resistance to Verticillium dahliae race 1 in lettuce

Inderbitzin, Patrik; Christopoulou, Marilena; Lavelle, Dean; Reyes-Chin-Wo, Sebastian; Michelmore, Richard W.; Subbarao, Krishna V.; Simko, Ivan

doi:10.1186/s12870-019-1905-9

BMC Plant Biology

Table 2 Accessions used in this study sorted by horticultural type and accession name

From: The LsVe1L allele provides a molecular marker for resistance to Verticillium dahliae race 1 in lettuce

Type	Accession	Identifier	Genome	Race 1 resistance	LsVe1L	LsVe3L	LsVe4L	LsVe1S	LsVe2S	LsVe3S	No. of tested plants	Proportion of symptomatic plants^k
Batavia	Anuenue^{a, b}	L2	+	–	–	–	–	–	+	+	90	0.26 (0.18–0.35)
Batavia	Batavia Reine des Glaces^{c, b}	L90	–	–	–	NDⁱ	–	ND	ND	ND	90	0.44 (0.35–0.55)
Batavia	Iceberg^{c, b}	L115	–	–	–	ND	–	ND	ND	ND	30	0.50 (0.33–0.67)
Batavia	La Brillante^{d, e}	10G364–1	+	+	+	+	+	–	–	–	NT^j	NT
Batavia	La Brillante^{c, b}	L119	–	+	+	ND	+	ND	ND	ND	180	0.00 (0.00–0.02)
Batavia	Laura^{d, b}	L43	+	+	+	+	+	–	–	–	60	0.00 (0.00–0.06)
Batavia	Reines des Glaces^{d, b}	L53	+	–	–	–	–	+	+	+	30	0.40 (0.25–0.58)
Butterhead	Allegiance^{a, b}	L85	–	–	–	ND	+	ND	ND	ND	30	0.17 (0.07–0.34)
Butterhead	Ancora^{a, f}	L240	–	+	+	ND	+	ND	ND	ND	60	0.00 (0.00–0.06)
Butterhead	Bennett^{a, b}	L93	–	–	–	ND	+	ND	ND	ND	30	0.20 (0.10–0.37)
Butterhead	Bibb^{d, b}	L26	+	–	–	–	–	+	+	+	30	0.07 (0.02–0.21)
Butterhead	Cobham Green^{a, b}	L6	+	–	–	+	+	+	+	–	30	0.80 (0.63–0.91)
Butterhead	Dark Green Boston-C^{d, b}	L71	+	–	–	–	+	+	+	–	26	0.23 (0.11–0.42)
Butterhead	Grappa^{a, b}	L106	–	–	–	ND	–	ND	ND	ND	30	0.07 (0.02–0.21)
Butterhead	Little Gem-G^{d, b}	L77	+	+	+	+	+	–	–	–	60	0.00 (0.00–0.06)
Butterhead	Margarita^{d, b}	L45	+	–	–	–	+	+	+	–	30	0.30 (0.17–0.48)
Butterhead	Mariska^{d, b}	L46	+	–	–	–	+	+	+	–	29	0.24 (0.12–0.42)
Butterhead	Martin^{a, b}	L124	–	–	–	ND	–	ND	ND	ND	30	0.17 (0.07–0.34)
Butterhead	Ostinata^{a, b}	L127	–	–	–	ND	+	ND	ND	ND	30	0.07 (0.02–0.21)
Butterhead	Tania^{a, b}	L149	–	–	–	ND	+	ND	ND	ND	30	0.07 (0.02–0.21)
Butterhead	Tinto^{a, b}	L23	+	+	+	+	+	–	–	–	59	0.00 (0.00–0.06)
Green leaf	Alpine^{a, b}	L86	–	–	–	ND	–	ND	ND	ND	30	0.40 (0.25–0.58)
Green leaf	Franklin^{a, b}	L100	–	–	–	ND	–	ND	ND	ND	60	0.20 (0.12–0.32)
Green leaf	Genecorps Green^{a, b}	L103	–	–	–	ND	–	ND	ND	ND	30	0.60 (0.42–0.75)
Green leaf	Grand Rapids^{d, b}	L37	+	–	–	–	–	+	+	+	60	0.45 (0.33–0.58)
Green leaf	Green Vision^{a, b}	L109	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Green leaf	Hacienda^{d, b}	L40	+	–	–	–	–	+	+	+	30	0.97 (0.83–0.99)
Green leaf	Plymouth^{a, b}	L19	+	+	+	+	+	–	–	–	120	0.00 (0.00–0.03)
Green leaf	Pybas Green^{a, b}	L133	–	–	–	ND	–	ND	ND	ND	30	0.37 (0.22–0.54)
Green leaf	Salad Bowl^{a, f}	L307	–	–	–	ND	–	ND	ND	ND	27	0.41 (0.25–0.59)
Green leaf	Shining Star^{a, b}	L141	–	–	–	ND	–	ND	ND	ND	30	0.50 (0.33–0.67)
Green leaf	Slobolt^{d, b}	L56	+	–	–	–	–	+	+	+	29	0.45 (0.28–0.62)
Green leaf	Tehama^{a, b}	L150	–	–	–	ND	–	ND	ND	ND	30	0.47 (0.30–0.64)
Green leaf	Tropicana^{d, b}	L58	+	–	–	–	–	+	+	+	30	0.70 (0.52–0.83)
Green leaf	Two Star^{a, b}	L25	+	–	–	–	–	+	+	+	150	0.39 (0.31–0.47)
Green leaf	Waldmann’s Green^{a, b}	L160	–	–	–	ND	–	ND	ND	ND	30	0.50 (0.33–0.67)
Green leaf	Waldmans Green-G^{d, b}	L84	+	–	–	–	–	+	+	+	30	0.37 (0.22–0.54)
Green leaf	Western Green^{a, b}	L161	–	–	–	ND	–	ND	ND	ND	30	0.90 (0.74–0.97)
Green leaf	Xena^{d, b}	L63	+	+	+	+	+	–	–	–	59	0.00 (0.00–0.06)
Iceberg	Autumn Gold^{d, b}	L66	+	–	–	–	–	+	+	+	28	0.54 (0.36–0.70)
Iceberg	Bayview^{a, b}	L92	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Big Ben^{a, b}	L94	–	–	–	ND	–	ND	ND	ND	30	0.27 (0.14–0.44)
Iceberg	Calicel^{d, b}	L27	+	–	–	–	–	+	+	+	26	0.54 (0.35–0.71)
Iceberg	Calmar^{a, b}	L5	+	–	–	–	–	+	+	+	30	0.50 (0.33–0.67)
Iceberg	Cannery Row^{a, b}	L163	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Iceberg	Cisco^{d, b}	L30	+	–	–	–	–	+	+	+	26	0.65 (0.46–0.81)
Iceberg	Coolguard^{d, b}	L31	+	–	–	–	–	+	+	+	28	0.86 (0.69–0.94)
Iceberg	Corona^{a, b}	L169	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Iceberg	Diplomat^{d, b}	L34	+	–	–	–	–	+	+	+	29	0.55 (0.38–0.72)
Iceberg	Durango^{a, b}	L173	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Early Bird^{a, b}	L35	+	–	–	–	–	+	+	+	30	0.40 (0.25–0.58)
Iceberg	El Dorado^{a, b}	L174	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Iceberg	Empire^{a, b}	L175	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Grand Slam^{a, b}	L105	–	–	–	ND	–	ND	ND	ND	30	0.27 (0.14–0.44)
Iceberg	Great Lakes^{a, b}	L107	–	–	–	ND	–	ND	ND	ND	30	0.40 (0.25–0.58)
Iceberg	Great Lakes 659-G^{d, b}	L73	+	–	–	–	–	+	+	+	30	0.37 (0.22–0.54)
Iceberg	Hallmark^{a, b}	L111	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Home Run^{a, b}	L182	–	–	–	ND	–	ND	ND	ND	30	0.37 (0.22–0.54)
Iceberg	Icon^{a, b}	L116	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Ithaca ZAA-C^{d, b}	L74	+	–	–	–	–	+	+	+	30	0.83 (0.66–0.93)
Iceberg	Laguna Fresca^{a, b}	L120	–	–	–	ND	–	ND	ND	ND	30	0.17 (0.07–0.34)
Iceberg	Legend^{a, b}	L121	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Liberty^{a, b}	L122	–	–	–	ND	–	ND	ND	ND	30	0.37 (0.22–0.54)
Iceberg	Mesa 659-C^{d, b}	L78	+	–	–	–	–	+	+	+	30	0.80 (0.63–0.91)
Iceberg	Monument^{a, b}	L125	–	–	–	ND	–	ND	ND	ND	30	0.17 (0.07–0.34)
Iceberg	Pacific^{a, b}	L128	–	–	–	ND	–	ND	ND	ND	60	0.18 (0.11–0.30)
Iceberg	Primus^{a, b}	L20	+	–	–	–	–	+	+	+	30	0.57 (0.39–0.73)
Iceberg	Salinas^g	NA^h	NA	–	–	–	–	+	+	+	NT	NT
Iceberg	Salinas^{c, b}	L138	–	–	–	ND	–	ND	ND	ND	180	0.55 (0.48–0.62)
Iceberg	Salinas 88^{c, b}	L139	–	–	–	ND	–	ND	ND	ND	120	0.48 (0.40–0.57)
Iceberg	Salinas 88-G^{d, b}	L81	+	–	–	–	–	+	+	+	30	0.40 (0.25–0.58)
Iceberg	Sharp Shooter^{a, b}	L140	–	–	–	ND	–	ND	ND	ND	30	0.60 (0.42–0.75)
Iceberg	Silverado^{a, b}	L143	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Sniper^{a, b}	L144	–	–	–	ND	–	ND	ND	ND	60	0.55 (0.42–0.67)
Iceberg	Sun Devil^{a, b}	L146	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Iceberg	Sure Shot^{a, b}	L148	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Iceberg	Telluride^{a, b}	L151	–	–	–	ND	–	ND	ND	ND	90	0.34 (0.25–0.45)
Iceberg	Tiber^{a, b}	L152	–	–	–	ND	–	ND	ND	ND	60	0.53 (0.41–0.65)
Iceberg	Tribute^{a, b}	L153	–	–	–	ND	–	ND	ND	ND	30	0.40 (0.25–0.58)
Iceberg	Trojan^{a, b}	L155	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Iceberg	Vandenberg^{a, b}	L156	–	–	–	ND	–	ND	ND	ND	30	0.47 (0.30–0.64)
Iceberg	Vanguard^{a, b}	L157	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Iceberg	Vanguard-C^{d, b}	L82	+	–	–	–	–	+	+	+	30	0.30 (0.17–0.48)
Iceberg	Vanguard-G^{d, b}	L83	+	–	–	–	–	+	+	+	30	0.23 (0.12–0.41)
Iceberg	Venus^{a, b}	L183	–	–	–	ND	–	ND	ND	ND	30	0.47 (0.30–0.64)
Iceberg	Winterhaven^{d, b}	L61	+	–	–	–	–	+	+	+	23	0.61 (0.41–0.78)
Latin	Barnwood Gem^{a, b}	L89	–	+	+	ND	+	ND	ND	ND	60	0.00 (0.00–0.06)
Latin	Brigade^{a, b}	L97	–	–	–	ND	–	ND	ND	ND	30	0.17 (0.07–0.34)
Latin	Gallega^{a, b}	L102	–	+	+	ND	+	ND	ND	ND	60	0.00 (0.00–0.06)
Latin	Eruption^{c, b}	L9	+	+	+	+	+	–	–	–	120	0.00 (0.00–0.03)
Latin	Little Gem^{c, b}	L123	–	+	+	ND	+	ND	ND	ND	60	0.00 (0.00–0.06)
Latin	Little Gem^{d, b}	L44	+	+	+	+	+	–	–	–	60	0.00 (0.00–0.06)
Latin	Pavane^{a, b}	L16	+	+	+	+	+	–	–	–	90	0.00 (0.00–0.04)
Oil	PI 250020^{a, b}	L17	+	–	–	–	–	+	+	+	30	1.00 (0.89–1.00)
Oil	PI 251245^{d, b}	L50	+	–	–	–	–	+	+	+	30	1.00 (0.89–1.00)
Oil	PI 251245^{a, b}	L18	–	–	–	ND	–	ND	ND	ND	30	1.00 (0.89–1.00)
Oil	PI 251246^{c, b}	L131	–	–	–	ND	–	ND	ND	ND	60	0.98 (0.91–1.00)
Red leaf	Aragon Red^{a, b}	L87	–	–	–	ND	–	ND	ND	ND	30	0.47 (0.30–0.64)
Red leaf	Battalion^{a, b}	L91	–	+	+	ND	+	ND	ND	ND	60	0.00 (0.00–0.06)
Red leaf	Big Red^{a, b}	L95	–	–	–	ND	–	ND	ND	ND	30	1.00 (0.89–1.00)
Red leaf	Deep Red^{d, b}	L32	+	–	–	–	–	+	+	+	30	0.80 (0.63–0.91)
Red leaf	Lolla Rossa^{a, b}	L14	+	+	+	+	+	–	–	–	60	0.00 (0.00–0.06)
Red leaf	Merlot^{a, b}	L15	+	+	+	+	+	–	–	–	90	0.00 (0.00–0.04)
Red leaf	New Red^{a, b}	L126	–	–	–	ND	–	ND	ND	ND	30	0.97 (0.83–0.99)
Red leaf	Prizehead^{a, b}	L132	–	–	–	ND	–	ND	ND	ND	30	0.70 (0.52–0.83)
Red leaf	Red Fox^{d, b}	L51	+	–	–	–	–	+	+	+	30	0.70 (0.52–0.83)
Red leaf	Red Grenoble^{a, b}	L134	–	–	–	ND	+	ND	ND	ND	60	0.30 (0.20–0.43)
Red leaf	Red Rage^{a, b}	L135	–	–	–	ND	–	ND	ND	ND	30	0.97 (0.83–0.99)
Red leaf	Red Tide^{a, b}	L136	–	–	–	ND	–	ND	ND	ND	30	0.57 (0.39–0.73)
Red leaf	Red Tide^{d, b}	L52	+	–	–	–	–	+	+	+	30	0.43 (0.27–0.61)
Red leaf	Sentry^{a, b}	L21	+	+	+	+	+	–	–	–	180	0.00 (0.00–0.02)
Red leaf	Western Red Leaf^{d, b}	L60	+	–	–	–	–	+	+	+	30	0.53 (0.36–0.70)
Romaine	Annapolis^{c, b}	L1	+	+	+	+	+	–	–	–	90	0.00 (0.00–0.04)
Romaine	Avalanche^{c, b}	L88	–	–	–	ND	–	ND	ND	ND	90	0.22 (0.15–0.32)
Romaine	Blonde Lente a Monter^{c, b}	L4	+	–	–	–	–	+	+	+	30	0.70 (0.52–0.83)
Romaine	Brave Heart^{c, b}	L96	–	–	–	ND	–	ND	ND	ND	60	0.32 (0.21–0.44)
Romaine	Caesar^{c, b}	L98	–	–	–	ND	–	ND	ND	ND	30	0.17 (0.07–0.34)
Romaine	Camino Real^{c, b}	L162	–	–	–	ND	–	ND	ND	ND	30	0.37 (0.22–0.54)
Romaine	Clemente^{c, b}	L166	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Romaine	Coastal Star^{c, b}	L167	–	–	–	ND	–	ND	ND	ND	30	0.50 (0.33–0.67)
Romaine	Conquistador^{c, b}	L168	–	–	–	ND	–	ND	ND	ND	30	0.27 (0.14–0.44)
Romaine	Costa Rica #4^{d, b}	L70	+	–	–	–	–	+	+	+	30	0.43 (0.27–0.61)
Romaine	Costa Rica #4^{c, b}	L170	–	–	–	ND	–	ND	ND	ND	30	0.33 (0.19–0.51)
Romaine	Darkland EL^{c, b}	L171	–	–	–	ND	–	ND	ND	ND	30	0.37 (0.22–0.54)
Romaine	Defender^{c, b}	L8	+	+	+	+	+	–	–	–	90	0.00 (0.00–0.04)
Romaine	EXP1752^{a, b}	L99	–	–	–	ND	–	ND	ND	ND	30	0.17 (0.07–0.34)
Romaine	Flashy Troutback^{c, b}	L10	+	–	–	+	+	–	+	–	30	0.30 (0.17–0.48)
Romaine	Fresh Heart^{c, b}	L101	–	–	–	ND	–	ND	ND	ND	30	0.37 (0.22–0.54)
Romaine	Green Forest^{c, f}	L189	–	–	–	ND	–	ND	ND	ND	28	0.46 (0.30–0.64)
Romaine	Green Towers^{c, b}	L108	–	–	–	ND	–	ND	ND	ND	60	0.20 (0.10–0.37)
Romaine	Green Towers^{d, b}	L39	+	–	–	–	–	+	+	+	30	0.23 (0.12–0.41)
Romaine	Hearts Delight^{c, b}	L112	–	–	–	ND	–	ND	ND	ND	150	0.31 (0.24–0.38)
Romaine	Heavy Heart^{c, b}	L113	–	–	–	ND	–	ND	ND	ND	30	0.30 (0.17–0.48)
Romaine	King Henry^{c, b}	L117	–	–	–	ND	–	ND	ND	ND	30	0.20 (0.10–0.37)
Romaine	King Louie 2005^{d, b}	L76	+	–	–	–	–	+	+	+	30	0.83 (0.66–0.93)
Romaine	Klamath^{a, b}	L118	–	–	–	ND	–	ND	ND	ND	30	0.17 (0.07–0.34)
Romaine	Lee Tal^{c, b}	L12	+	–	–	–	+	+	+	–	59	0.17 (0.09–0.28)
Romaine	Lobjoits Cos^{c, b}	L13	+	–	–	–	–	+	+	+	90	0.53 (0.43–0.63)
Romaine	Parris Island Cos^{c, b}	L129	–	–	–	ND	–	ND	ND	ND	60	0.45 (0.33–0.58)
Romaine	Parris Island Cos 714 (PIC714)^{a, b}	L130	–	–	–	ND	–	ND	ND	ND	30	0.40 (0.25–0.58)
Romaine	Parris Island Cos-G^{d, b}	L80	–	–	–	ND	–	ND	ND	ND	30	0.43 (0.27–0.61)
Romaine	Passport^{d, b}	L64	+	–	–	–	–	+	+	+	30	0.50 (0.33–0.67)
Romaine	PI 171674^{d, b}	L49	+	–	–	–	–	+	+	+	90	0.32 (0.23–0.42)
Romaine	SM09A^{c, b}	L22	+	–	–	–	–	+	+	+	30	0.60 (0.42–0.75)
Romaine	Sunbelt^{c, b}	L184	–	–	–	ND	–	ND	ND	ND	30	0.40 (0.25–0.58)
Romaine	Triple Threat^{c, b}	L24	+	–	–	–	–	+	+	+	60	0.58 (0.46–0.70)
Romaine	Triton^{c, b}	L154	–	–	–	ND	–	ND	ND	ND	30	0.47 (0.30–0.64)
Romaine	VJO3R^{a, b}	L159	–	–	–	ND	–	ND	ND	ND	30	0.27 (0.14–0.44)
Stem	Balady Banha^{c, b}	L3	+	+	+	+	+	–	–	–	88	0.00 (0.00–0.04)
Stem	Celtuce^{a, b}	L165	–	–	–	ND	–	ND	ND	ND	30	0.40 (0.25–0.58)
Stem	Celtuce-G^{d, b}	L69	+	–	–	–	–	+	+	+	30	0.43 (0.27–0.61)
Lactuca serriola	11-G99^{c, f}	L185	–	–	–	ND	+	ND	ND	ND	30	0.70 (0.52–0.83)

^aGermplasm Collection of USDA-ARS Salinas, CA
^bSeeds
^cGenome Wide Association Mapping Collection (GBS) of USDA-ARS Salinas, CA
^dUC Davis Collection
^eDark-grown seedlings
^fLeaf tissue from field
^gReyes-Chin-Wo et al., 2017
^hNot applicable (NA), because this genome was sequenced previously (Reyes-Chin-Wo et al., 2017)
ⁱNot determined (ND)
^jNot field tested in the present study (NT). Cultivars La Brillante and Salinas we previously confirmed to be resistant and susceptible, respectively, to V. dahliae race 1 (Hayes at al., 2011)
^k95% confidence interval for the proportion of symptomatic plants is shown in parentheses

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