Table 5 Descriptive statistics of the B. thunbergii cv. ‘Kobold’ reference-guided transcriptome assembly
From: Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid
Trinity reference-based assembly results | |
|---|---|
Number of transcripts | 122,872 |
Total length (bp) | 189,291,041 |
Mean length (bp) | 1541 |
Number of ORFs (%) | 55,186 (44.28%) |
Transcript length N50 (bp) | 1991 |
GC Content | 40.0% |
TransRate results | |
TransRate score | 0.403 |
TransRate optimal score | 0.427 |
TransRate cutoff | 0.037 |
Number of good contigs (%) | 120,972 (98.5%) |
BUSCO results | |
Complete (%) | 1286 (89.3%) |
Complete and single-copy (%) | 651 (45.2%) |
Complete and duplicated (%) | 635 (44.1%) |
Fragmented (%) | 47 (3.3%) |
Missing (%) | 107 (7.4%) |