Table 4 Summary statistics of the B. thunbergii cv. ‘Kobold’ genome assembly, by stage
From: Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid
Variables | FALCON-Unzip | Final assemblya | Hi-C scaffoldingb | ||
|---|---|---|---|---|---|
Primary contigs | Haplotigs | Primary contigs | Haplotigs | ||
Number of contigs | 4671 | 7144 | 2698 | 8790 | 14 |
Total length (Gbp) | 1.36 | 0.88 | 1.23 | 0.99 | 1.20 |
Longest (Mbp) | 8.60 | 1.49 | 8.60 | 1.49 | 99.76 |
Shortest (bp) | 8581 | 561 | 20,469 | 561 | 54.72 |
>  100 kbp (%) | 2551 (54.6) | 2836 (39.7) | 2229 (82.6) | 3126 (35.6) | 14 (100) |
>  1 Mbp (%) | 289 (6.2) | 9 (0.1) | 289 (10.7) | 9 (0.1) | 14 (100) |
Mean length (Mbp) | 0.29 | 0.12 | 0.46 | 0.11 | 85.40 |
N50 length (Mbp) | 0.67 | 0.21 | 0.76 | 0.19 | 88.62 |
GC content (%) | 37.6 | 37.7 | 37.7 | 37.7 | 37.66 |