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Table 2 Genes contained in the sequenced Lythraceae chloroplast genome

From: Comparative analyses of chloroplast genomes from 22 Lythraceae species: inferences for phylogenetic relationships and genome evolution within Myrtales

Gene category

Groups of genes

Name of genes

Self-replication

Ribosomal RNAs

rrn16 b ;rrn23 b ;rrn4.5 b ;rrn5 b

 

Transfer RNAs

trnA-UGC a,b ;trnC-GCA;trnD-GUC;trnE-UUC;trnF-GAA;trnfM-CAU

 

trnG-UCC a ;trnG-GCC;trnH-GUG;trnI-CAU b ;trnI-GAU a,b ;trnK-UUU a

 

trnL-CAA b ;trnL-UAA a; trnL-UAG;trnM-CAU;trnN-GUU b ;trnP-UGG

 

trnQ-UUG;trnR-ACG b ;trnR-UCU;trnS-GCU;trnS-GGA;trnS-UGA

 

trnT-GGU;trnT-UGU;trnV-UAC a; trnW-CCA;trnY-GUA

Small subunit of ribosome

rps2;rps3;rps4;rps7 b ;rps8;rps11;rps12 a,b ;rps14;rps15;rps16 a ;rps18;rps19

Large subunit of ribosome

rpl2 a,b ;rpl14;rpl16 a ;rpl20;rpl23 b ;rpl32;rpl33;rpl36

DNA dependent RNA polymerase

rpoA;rpoB;rpoC1 a ;rpoC2

Photosynthesis

Subunits of photosystem I

psaA;psaB;psaC;psaI;psaJ

 

Subunits of photosystem II

psbA;psbB;psbC;psbD;psbE;psbF;psbH;psbI;psbJ;psbK;psbL;psbM

 

psbN; psbT;psbZ

Subunits of cytochrome

petA;petB a ;petD;petG;petL;petN

Subunits of ATP synthase

atpA;atpB;atpE;atpF a ;atpH;atpI

ATP-dependent protease subunit p gene

clpP a

Large subunit of Rubisco

rbcL

Subunits of NADH dehydrogenase

ndhA a ;ndhB a,b ;ndhC;ndhD;ndhE;ndhF;ndhG;ndhH;ndhI;ndhJ;ndhK

Other genes

Maturase

matK

 

Envelop membrane protein

cemA

Acetyl-CoAcarboxylase

accD

other

ccsA;infA

Genes of unknown function

Conserved open reading frames

ycf1 b ;ycf2 b ; ycf3 a ; ycf4

  1. aIntron-containing genes
  2. bGenes located in the IR regions