Comparative analyses of chloroplast genomes from 22 Lythraceae species: inferences for phylogenetic relationships and genome evolution within Myrtales

Gu, Cuihua; Ma, Li; Wu, Zhiqiang; Chen, Kai; Wang, Yixiang

doi:10.1186/s12870-019-1870-3

Table 1 Summary of complete chloroplast genomes for 22 species in Lythraceae

From: Comparative analyses of chloroplast genomes from 22 Lythraceae species: inferences for phylogenetic relationships and genome evolution within Myrtales

		L.excelsa	L.limii	L.villosa	L.siamica	L.tomentosa	L.venusta	L.calyculata	L.fauriei	L.floribunda	L.guilinensis
Accession number		MK881635	MK881627	MK881633	MK881628	MK881632	MK881630	MK881636	NC_029808	NC_031825	NC_029885
Family		Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae
Total length (bp)		152,214	152,153	160,769	152,519	152,294	152,521	152,294	152,440	152,240	152,193
GC(%)		37.6	37.58	36.97	37.58	37.65	37.57	37.65	37.61	37.72	37.62
LSC
Length (bp)		84,053	83,954	88,702	84,166	84,013	84,194	84,012	83,926	83,967	83,817
GC(%)		35.94	35.92	34.69	35.89	35.98	35.87	35.97	35.94	36.1	35.95
length(%)		55.2	55.2	55.2	55.2	55.2	55.2	55.2	55.1	55.2	55.1
SSC
Length (bp)		16,917	16,905	18,255	16,865	16,917	16,833	16,798	16,934	16,787	16,909
GC(%)		31.03	30.96	30.78	30.95	31.03	30.97	31.17	30.92	31.23	30.97
length(%)		11.1	11.1	11.4	11.1	11.1	11.0	11.0	11.1	11.0	11.1
IR
Length (bp)		25,622	25,647	26,906	25,744	25,622	25,747	25,742	25,790	25,788	25,794
GC(%)		42.49	42.47	42.83	42.51	42.49	42.51	42.51	42.51	42.48	42.47
length(%)		16.8	16.9	16.7	16.9	16.8	16.9	16.9	16.9	16.9	16.9
L. indica	L.speciosa	L.subcostata	L.intermedia	D.grandiflora	T.natans	L.salicaria	L.intermis	P.granatum	W.fruticosa	R.rotundifolia	H.myrtifolia
NC_030484	NC_031414	NC_034952	NC_034662	MK881638	MK881634	MK881629	MK881631	NC_035240	MK881637	MK881626	MG921615
Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae	Lythraceae
152,205	152,476	152,049	152,330	156,084	155,555	158,483	157,756	158,639	159,380	157,753	159,219
37.59	37.58	37.59	37.59	37.49	36.41	36.81	36.89	36.92	36.63	36.89	37.00
LSC
84,046	84,051	83,890	83,987	86,471	88,506	88,999	88,424	89,022	89,569	88,422	88,571
35.93	35.89	35.92	35.92	35.59	34.19	34.75	34.76	34.89	34.53	34.76	35.00
55.2	55.1	55.2	55.1	55.4	56.9	56.2	56.1	56.1	56.2	56.1	55.6
SSC
16,915	16,886	16,909	16,871	16,501	18,274	18,530	17,386	18,685	18,697	17,386	18,822
30.98	30.97	30.97	30.93	31.28	30.18	30.68	31.01	30.63	30.23	31.01	30.60
11.1	11.0	11.1	11.1	10.6	11.7	11.7	11.0	11.8	11.7	11.0	11.8
IR
25,622	25,817	25,625	25,736	26,556	24,388	25,477	25,973	25,466	25,557	25,973	25,643
42.5	42.51	42.5	42.51	42.5	42.77	42.63	42.5	42.78	42.65	42.5	42.60
16.8	16.9	16.9	16.9	17.0	15.7	16.1	16.5	16.1	16.0	16.5	16.1

GC guanine-cytosine, LSC large single-copy region, SSC short single-copy region, IRs inverted repeats

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