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Fig. 3 | BMC Plant Biology

Fig. 3

From: Comparative analysis of B-BOX genes and their expression pattern analysis under various treatments in Dendrobium officinale

Fig. 3

Species used in this study (a) and Maximum-likelihood gene tree (b) for the BBX gene family. The HMM (hidden Markov model) profile of BBX domain (Pfam00643) was used to identify for all of BBXs in these plant genomes with HMMER 3.0 software. Each putative BBX protein was further examined the presence of B-BOX domain by submitting them to SMART database, Pfam and InterProScan, respectively. The Maximum likelihood (ML) tree was generated by FastTree software with JTT model. A total of 1340 BBX genes were divided into four clades and were distinguished by different colors and legends

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