Table 2 Information of new genome-wide significant association signals using EMMAX
Trait | Chromosome | SNP position (IRGSP 1.0) |
|---|---|---|
Heading days | 1 | 23,170,046~23,178,871 |
2 | 23,561,650~23,647,315 | |
4 | 501,174~599,922 | |
8 | 24,711,213~24,788,877 | |
11 | 25,420,422~25,527,993 | |
Plant height | 8 | 4,006,947~4,099,049 |
11 | 2,700,225~2,766,157 | |
Seed set rate | 1 | 18,520,148~18,579,781 |
1 | 22,939,166~22,978,931 | |
6 | 8,983,019~9,267,052 | |
6 | 27,910,112~27,985,250 | |
7 | 7,750,765~9,020,981 | |
8 | 2,701,887~2,793,377 | |
8 | 23,506,423~23,515,115 | |
9 | 5,476,906~5,579,147 | |
Panicle length | 4 | 431,949~574,020 |
4 | 30,763,510~31,085,620 | |
6 | 10,410,902~10,540,457 | |
8 | 19,760,055~19,773,993 | |
Grain length | 1 | 40,952,595~41,000,011 |
8 | 18,807,278~18,877,159 | |
11 | 10,147,830~10,203,596 | |
Grain width | 3 | 11,852,705~11,908,957 |
11 | 24,258,724~24,290,332 | |
100 grains weight | 3 | 20,308,101~20,374,967 |
7 | 8,265,240~8,330,871 | |
11 | 9,821,720~9,835,992 | |
Flag leaf length | 9 | 19,484,679~19,503,424 |
11 | 17,945,459~17,974,773 | |
12 | 17,992,241~18,042,367 | |
Panicle number per plant | 1 | 22,182,883~22,220,448 |
12 | 4,146,868~4,199,211 |