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Table 2 Information of new genome-wide significant association signals using EMMAX

From: Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.)

Trait Chromosome SNP position (IRGSP 1.0)
Heading days 1 23,170,046~23,178,871
2 23,561,650~23,647,315
4 501,174~599,922
8 24,711,213~24,788,877
11 25,420,422~25,527,993
Plant height 8 4,006,947~4,099,049
11 2,700,225~2,766,157
Seed set rate 1 18,520,148~18,579,781
1 22,939,166~22,978,931
6 8,983,019~9,267,052
6 27,910,112~27,985,250
7 7,750,765~9,020,981
8 2,701,887~2,793,377
8 23,506,423~23,515,115
9 5,476,906~5,579,147
Panicle length 4 431,949~574,020
4 30,763,510~31,085,620
6 10,410,902~10,540,457
8 19,760,055~19,773,993
Grain length 1 40,952,595~41,000,011
8 18,807,278~18,877,159
11 10,147,830~10,203,596
Grain width 3 11,852,705~11,908,957
11 24,258,724~24,290,332
100 grains weight 3 20,308,101~20,374,967
7 8,265,240~8,330,871
11 9,821,720~9,835,992
Flag leaf length 9 19,484,679~19,503,424
11 17,945,459~17,974,773
12 17,992,241~18,042,367
Panicle number per plant 1 22,182,883~22,220,448
12 4,146,868~4,199,211