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Table 1 Summary of association mapping results for 12 agronomic traits using EMMAX

From: Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.)

Trait Number of significant loci Identical genome region (IRGSP 1.0)
Guangzhou Hangzhou Position (Guangzhou) Position (Hangzhou)
Heading days 18 174
Plant height 3 2
Seed set rate 943 78 Chr05_25567352 Chr05_25408291
Chr06_8915912~Chr06_9551431 Chr06_9230285
Chr07_8779751 Chr07_8438294~Chr07_8467097
Panicle length 1 129
Grain length 5 7
Grain width 2 54
Grain length/width 0 3772
100 grains weight 0 1
Flag leaf length 3 3
Flag leaf width 9 31
Flag leaf length/width 323 19 Chr10_12103594~Chr10_12266458 Chr10_12442627
Chr12_8018851~Chr12_8206256 Chr12_8234635
Panicle number per plant 1 2
Total 1308 4272