Table 1 Summary of association mapping results for 12 agronomic traits using EMMAX
Trait | Number of significant loci | Identical genome region (IRGSP 1.0) | ||
|---|---|---|---|---|
Guangzhou | Hangzhou | Position (Guangzhou) | Position (Hangzhou) | |
Heading days | 18 | 174 | – | – |
Plant height | 3 | 2 | – | – |
Seed set rate | 943 | 78 | Chr05_25567352 | Chr05_25408291 |
Chr06_8915912~Chr06_9551431 | Chr06_9230285 | |||
Chr07_8779751 | Chr07_8438294~Chr07_8467097 | |||
Panicle length | 1 | 129 | – | – |
Grain length | 5 | 7 | – | – |
Grain width | 2 | 54 | – | – |
Grain length/width | 0 | 3772 | – | – |
100 grains weight | 0 | 1 | – | – |
Flag leaf length | 3 | 3 | – | – |
Flag leaf width | 9 | 31 | – | – |
Flag leaf length/width | 323 | 19 | Chr10_12103594~Chr10_12266458 | Chr10_12442627 |
Chr12_8018851~Chr12_8206256 | Chr12_8234635 | |||
Panicle number per plant | 1 | 2 | – | – |
Total | 1308 | 4272 | – | – |