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Table 3 QTL for flesh color (fc), flesh extract color (fec) and flesh chlorophyll content (fcc) detected with two F2 populations (9110Gt × PI183967) in two experiments (SY2016W: Sanya 2016 winter, BJ2017F: Beijing 2017 fall)

From: QTL mapping and genome-wide association study reveal two novel loci associated with green flesh color in cucumber

Populations

Environments

Consensus

Supporting

Chr

QTL peak

Peak LOD

1.5 LOD interval

Phenotypic

  

QTL

QTL

 

(cM)

score

left (cM)

right (cM)

variation (%)

234 F2

SY2016W

qgf5.1

fc_5.1

5

SSR18729 (5.7)

27.2

SSR13340 (0.0)

SSR14611 (6.9)

38.3

 

fec_5.1

5

SSR13340 (0.0)

10.1

SSR13340 (0.0)

SSR18729 (5.7)

22.2

 

fcc_5.1

5

SSR07284 (0.9)

14.6

SSR13340 (0.0)

SSR14269 (3.3)

23.9

125 F2

BJ2017F

qgf5.2

fc_5.2

5

SSR16032 (23.7)

19.3

SSR14611 (20.1)

SSR07284 (28.5)

57.6

 

fec_5.2

5

SSR16691 (22.5)

29.5

SSR14611 (20.1)

SSR07284 (28.5)

63.9

 

fcc_5.2

5

c5.loc22 (22.0)

21.0

SSR17464 (15.8)

SSR07284 (28.5)

49.1