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Table 5 The upregulated DEGs related to photosynthesis of A. canescens under 100 mM NaCl. The genes upregulated at 6 h are shaded in red, and the genes upregulated at 24 h but not at 6 h are shaded in blue

From: Identification of candidate genes related to salt tolerance of the secretohalophyte Atriplex canescens by transcriptomic analysis

Involved process

Gene ID

Homologous gene

log2 Ratio

(SL6/CL6)

log2 Ratio

(SL24/CL24)

Electron transport

Unigene31059_All

Photosystem II 10 kDa polypeptide

6.71

–

Unigene14296_All

NADPH-quinone oxidoreductase

1.80

−0.25

Unigene40452_All

Cytochrome b6/f complex subunit VIII

6.04

−5.95

Unigene5352_All

Ferredoxin-NADP reductase

4.57

−0.32

Unigene6812_All

Ferredoxin-3

1.92

−0.47

C4 carbon fixation

CL2649.Contig3_All

Phosphoenolpyruvate carboxylase

2.14

0.25

CL6760.Contig2_All

Phosphoenolpyruvate carboxylase

1.44

0.28

Unigene34895_All

Malate dehydrogenase

5.13

1.01

CL6022.Contig2_All

Malate dehydrogenase

1.42

−0.16

CL6958.Contig4_All

NADP-dependent malic enzyme

3.84

1.63

CL7555.Contig1_All

NAD-dependent malic enzyme

1.57

0.09

CL791.Contig2_All

Aspartate aminotransferase

1.94

1.58

CL8006.Contig1_All

Aspartate aminotransferase

1.14

0.47

CL7761.Contig1_All

Aspartate aminotransferase

1.12

0.25

Chlorophyll biosynthesis

Unigene31043_All

Protoporphyrinogen oxidase

−0.06

1.28

CL8468.Contig2_All

Protoporphyrinogen oxidase

0.34

7.90

Electron transport

CL4550.Contig3_All

Chlorophyll a-b binding protein

−8.16

1.05

Unigene173_All

Photosystem II CP43 chlorophyll apoprotein

−0.63

1.03

Unigene7017_All

Cytochrome f

0.68

1.58

Unigene10241_All

Photosystem I P700 apoprotein A2

−2.71

1.39

Unigene18662_All

photosystem I P700 apoprotein A2

−1.74

1.68

Unigene25839_All

Photosystem I reaction center subunit

–

7.17

Carbon fixation

CL1287.Contig1_All

Malate dehydrogenase [NADP]

−5.27

2.90

Unigene26311_All

Ribulose 1,5-bisphosphate carboxylase

−5.81

5.73

Unigene10116_All

Ribulose 1,5-bisphosphate carboxylase

−0.58

1.99

CL4619.Contig1_All

Alanine aminotransferase 2

−2.15

1.20