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Table 5 The upregulated DEGs related to photosynthesis of A. canescens under 100 mM NaCl. The genes upregulated at 6 h are shaded in red, and the genes upregulated at 24 h but not at 6 h are shaded in blue

From: Identification of candidate genes related to salt tolerance of the secretohalophyte Atriplex canescens by transcriptomic analysis

Involved process Gene ID Homologous gene log2 Ratio
(SL6/CL6)
log2 Ratio
(SL24/CL24)
Electron transport Unigene31059_All Photosystem II 10 kDa polypeptide 6.71
Unigene14296_All NADPH-quinone oxidoreductase 1.80 −0.25
Unigene40452_All Cytochrome b6/f complex subunit VIII 6.04 −5.95
Unigene5352_All Ferredoxin-NADP reductase 4.57 −0.32
Unigene6812_All Ferredoxin-3 1.92 −0.47
C4 carbon fixation CL2649.Contig3_All Phosphoenolpyruvate carboxylase 2.14 0.25
CL6760.Contig2_All Phosphoenolpyruvate carboxylase 1.44 0.28
Unigene34895_All Malate dehydrogenase 5.13 1.01
CL6022.Contig2_All Malate dehydrogenase 1.42 −0.16
CL6958.Contig4_All NADP-dependent malic enzyme 3.84 1.63
CL7555.Contig1_All NAD-dependent malic enzyme 1.57 0.09
CL791.Contig2_All Aspartate aminotransferase 1.94 1.58
CL8006.Contig1_All Aspartate aminotransferase 1.14 0.47
CL7761.Contig1_All Aspartate aminotransferase 1.12 0.25
Chlorophyll biosynthesis Unigene31043_All Protoporphyrinogen oxidase −0.06 1.28
CL8468.Contig2_All Protoporphyrinogen oxidase 0.34 7.90
Electron transport CL4550.Contig3_All Chlorophyll a-b binding protein −8.16 1.05
Unigene173_All Photosystem II CP43 chlorophyll apoprotein −0.63 1.03
Unigene7017_All Cytochrome f 0.68 1.58
Unigene10241_All Photosystem I P700 apoprotein A2 −2.71 1.39
Unigene18662_All photosystem I P700 apoprotein A2 −1.74 1.68
Unigene25839_All Photosystem I reaction center subunit 7.17
Carbon fixation CL1287.Contig1_All Malate dehydrogenase [NADP] −5.27 2.90
Unigene26311_All Ribulose 1,5-bisphosphate carboxylase −5.81 5.73
Unigene10116_All Ribulose 1,5-bisphosphate carboxylase −0.58 1.99
CL4619.Contig1_All Alanine aminotransferase 2 −2.15 1.20
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