Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus)

Table 3 Summary of candidate DETs for non-target site herbicide resistance and circadian rhythm associated proteins

	Keywords used in file search	Number of Hits
	Keywords used in file search	Whole Transcriptome	Differentially Expressed
Cytochrome P450	“CYP” “P450”	970	79
Glutathione Stransferase	“GST” “Glutathione Stransferase”	157	47
Glycosyltransferase	“glycosyltransferase” “glucosyltransferase”	689	69
ABC transporter protein	“ABC transporter” “ABC protein”	644	35
Circadian rhythm	“circadian”	833	42

The waterhemp transcriptome (Additional file 3) and significantly differentially expressed transcripts (Additional file 4) were mined for non-target site herbicide resistance and circadian rhythm associated transcripts using combinations of keywords to identify putative candidate transcripts for further investigation

ISSN: 1471-2229