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Fig. 8 | BMC Plant Biology

Fig. 8

From: Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus)

Fig. 8

Mapping of candidate waterhemp single nucleotide polymorphisms (SNPs) relative to the Amaranthus hypochondriacus genome. SNPs were identified by calling SNPs between the resistant and susceptible genotypes relative to the waterhemp v4 transcriptome. BLASTN (E < 10− 20, [27]) was used to predict relative transcript and SNP location based on ortholog location in the grain amaranth genome (Phytozome v12.1, Amaranthus hypochondriacus v2.1, [33]). Of the 189 high-quality SNPs identified, 118 could be reliably mapped to the grain amaranth genome. The highest concentration of SNPs was found on chromosome 15

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BMC Plant Biology

ISSN: 1471-2229

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