Skip to main content
Fig. 7 | BMC Plant Biology

Fig. 7

From: Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus)

Fig. 7

Clustering of waterhemp DETs based on predicted location relative to Amaranthus hypochondriacus genome. BLASTN (E < 10− 20, [27]) was used to predict relative transcript location based on ortholog location in the grain amaranth genome (Phytozome v12.1, Amaranthus hypochondriacus v2.1, [33]). Differentially expressed transcripts (DETs) were tested for overlap in a 100,000 bp window on center (± 50,000 bases) from the transcript start site. Neighboring DETs that fell into this window contributed to an average position of the cluster and the number of stacked transcripts. The DETs are color-coded based on the associated genotype(s). Blue circles indicate DETs associated with both the resistant and susceptible genotypes, green circles represent DETs associated with the resistant genotype and magenta circles represent DETs associated with the susceptible genotype. Transcript clusters were identified on all chromosomes except for chromosome 16

Back to article page