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Table 2 Significantly regulated biological processes (FDR < 0.05) which are commonly regulated in at least 6 of 9 transcriptomic studies

From: Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

GO_ID GO_TERM Count P-value Benjamini test
DOWN-REGULATED
GO:0006633 fatty acid biosynthetic process 3 7.02E-250 5.80E-247
GO:0015031 protein transport 6 2.93E-129 1.21E-126
GO:0016192 vesicle-mediated transport 4 1.08E-117 2.96E-115
GO:0046777 protein autophosphorylation 5 3.73E-117 7.70E-115
GO:0006468 protein phosphorylation 13 4.54E-32 7.49E-30
GO:0006839 mitochondrial transport 3 8.95E-26 1.23E-23
GO:0006096 glycolytic process 3 1.83E-23 2.16E-21
GO:0006412 Translation 9 7.14E-23 7.38E-21
GO:0000398 mRNA splicing, via spliceosome 3 3.95E-21 3.62E-19
GO:0071555 cell wall organization 3 3.95E-21 3.62E-19
GO:0006349 regulation of gene expression by genetic imprinting 3 4.28E-21 3.54E-19
GO:0010025 wax biosynthetic process 3 5.84E-21 4.39E-19
GO:0009611 response to wounding 5 4.47E-19 3.08E-17
GO:0006855 drug transmembrane transport 3 1.07E-17 6.77E-16
GO:0009409 response to cold 6 7.87E-15 4.65E-13
GO:0009553 embryo sac development 3 2.10E-12 1.15E-10
GO:0048364 root development 4 2.84E-12 1.47E-10
GO:0006629 lipid metabolic process 4 5.96E-11 2.90E-09
GO:0009058 biosynthetic process 3 3.39E-09 1.56E-07
GO:0009416 response to light stimulus 4 3.48E-08 1.51E-06
GO:0016310 Phosphorylation 4 4.45E-08 1.84E-06
GO:0009826 unidimensional cell growth 3 5.57E-08 2.19E-06
GO:0009723 response to ethylene 3 7.02E-08 2.64E-06
GO:0009751 response to salicylic acid 3 7.02E-08 2.64E-06
GO:0006508 Proteolysis 6 1.36E-07 4.89E-06
GO:0009555 pollen development 3 2.58E-07 8.86E-06
GO:0006886 intracellular protein transport 3 3.09E-07 1.02E-05
GO:0032259 Methylation 3 3.09E-07 1.02E-05
GO:0055085 transmembrane transport 3 3.09E-07 1.02E-05
GO:0045893 positive regulation of transcription, DNA-templated 3 4.61E-07 1.47E-05
GO:0051301 cell division 3 7.84E-07 2.40E-05
GO:0006511 ubiquitin-dependent protein catabolic process 3 7.84E-07 2.40E-05
GO:0006952 defense response 6 9.34E-07 2.76E-05
GO:0006457 protein folding 3 2.42E-06 6.90E-05
GO:0006979 response to oxidative stress 3 2.42E-06 6.90E-05
GO:0008152 metabolic process 3 3.55E-06 9.78E-05
GO:0007275 multicellular organism development 3 4.73E-06 1.26E-04
GO:0016567 protein ubiquitination 3 5.79E-06 1.49E-04
UP-REGULATED
GO:0006351 transcription, DNA-templated 14 7.89E-06 1.98E-04
GO:0006355 regulation of transcription, DNA-templated 15 8.21E-06 1.99E-04
GO:0055114 oxidation-reduction process 6 1.23E-05 2.90E-04
GO:0006970 response to osmotic stress 5 3.37E-05 7.74E-04
GO:0009737 response to abscisic acid 8 3.64E-05 8.11E-04
GO:0009845 seed germination 4 3.82E-05 8.29E-04
GO:0006396 RNA processing 4 3.84E-05 8.13E-04
GO:0042542 response to hydrogen peroxide 3 5.36E-05 0.001106
GO:0009636 response to toxic substance 3 5.78E-05 0.001163
GO:0009408 response to heat 4 5.78E-05 0.001163
GO:0009624 response to nematode 3 6.12E-05 0.001203
GO:0009414 response to water deprivation 5 6.12E-05 0.001203
GO:0009734 auxin-activated signaling pathway 4 6.53E-05 0.001253
GO:0009738 abscisic acid-activated signaling pathway 4 7.53E-05 0.001412
GO:0009908 flower development 4 1.07E-04 0.001968
GO:0006470 protein dephosphorylation 3 1.29E-04 0.002319
GO:0006810 Transport 5 1.29E-04 0.002319
GO:0009651 response to salt stress 6 1.36E-04 0.00238
GO:0015979 Photosynthesis 3 1.36E-04 0.00238
GO:0009733 response to auxin 4 1.38E-04 0.002364
GO:0007165 signal transduction 5 1.51E-04 0.00255
GO:0009873 ethylene-activated signaling pathway 3 1.90E-04 0.003131
GO:0009735 response to cytokinin 3 2.35E-04 0.003805
GO:0035556 intracellular signal transduction 3 2.61E-04 0.004137
GO:0042742 defense response to bacterium 3 2.61E-04 0.004137
GO:0046686 response to cadmium ion 3 3.34E-04 0.005191
GO:0005975 carbohydrate metabolic process 3 3.35E-04 0.005117
GO:0009793 embryo development ending in seed dormancy 3 3.35E-04 0.005117