Skip to main content

Table 3 Summary of small RNA sequencing and annotation in the six libraries

From: Integrated analysis of mRNA-seq and miRNA-seq in calyx abscission zone of Korla fragrant pear involved in calyx persistence

 

C_1

C_5

C_9

T_1

T_5

T_9

Raw reads

15,286,088

14,558,545

15,081,645

16,628,582

19,808,737

14,525,366

Clean reads

14,816,133

13,952,977

14,223,817

14,122,942

19,289,704

14,150,546

sRNA reads with 18–30 nt

13,297,814

11,786,437

11,412,245

9,257,732

17,475,944

12,527,738

Mapped sRNA reads

6,624,449

7,232,363

7,210,889

6,924,934

9,807,723

7,212,813

Known miRNA

105,499

38,469

28,187

15,050

74,146

36,416

Novel miRNA

77,212

38,278

38,410

27,118

69,111

55,420

rRNA

796,814

1,041,300

1,150,503

1,136,897

1,328,107

1,006,974

tRNA,

1

0

0

0

0

0

snRNA

6057

7915

8336

6040

8069

17,190

snoRNA,

23,253

25,748

33,010

25,689

45,378

36,739

ta-siRNA,

60,908

29,424

27,270

12,129

47,678

32,416

Others

5,554,705

6,051,229

5,925,173

5,702,011

8,235,234

6,027,658

Back to article page

BMC Plant Biology

ISSN: 1471-2229

Contact us