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Table 3 Summary of small RNA sequencing and annotation in the six libraries

From: Integrated analysis of mRNA-seq and miRNA-seq in calyx abscission zone of Korla fragrant pear involved in calyx persistence

  C_1 C_5 C_9 T_1 T_5 T_9
Raw reads 15,286,088 14,558,545 15,081,645 16,628,582 19,808,737 14,525,366
Clean reads 14,816,133 13,952,977 14,223,817 14,122,942 19,289,704 14,150,546
sRNA reads with 18–30 nt 13,297,814 11,786,437 11,412,245 9,257,732 17,475,944 12,527,738
Mapped sRNA reads 6,624,449 7,232,363 7,210,889 6,924,934 9,807,723 7,212,813
Known miRNA 105,499 38,469 28,187 15,050 74,146 36,416
Novel miRNA 77,212 38,278 38,410 27,118 69,111 55,420
rRNA 796,814 1,041,300 1,150,503 1,136,897 1,328,107 1,006,974
tRNA, 1 0 0 0 0 0
snRNA 6057 7915 8336 6040 8069 17,190
snoRNA, 23,253 25,748 33,010 25,689 45,378 36,739
ta-siRNA, 60,908 29,424 27,270 12,129 47,678 32,416
Others 5,554,705 6,051,229 5,925,173 5,702,011 8,235,234 6,027,658