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Table 1 Differentially expressed known miRNAs and their targets involved in anthocyanin biosynthesis in sweetpotato

From: Uncovering anthocyanin biosynthesis related microRNAs and their target genes by small RNA and degradome sequencing in tuberous roots of sweetpotato

  miRNA Normalized expression Target transcripts Normalized expression Transcripts Annotation Degradome Detection
XS-18 XZS-3 XS-18 XZS-3
  ib-miR156a-5p 214.32 441.76 Cluster-18,233.55254 155.92 84.08   Yes
miR156 ib-miR156b 11.28 0 Cluster-18,233.20487 238.99 123.33 Squamosa promoter-binding-like protein; Transcription factor GAMYB Yes
Cluster-18,233.55255 112.25 80.82 Yes
ib-miR156f-5p 11.28 0 Cluster-18,233.20485 239.94 219.41 Yes
Cluster-18,233.20486 108.11 106.18 Yes
Cluster-18,233.55250 133.91 189.22  
Cluster-18,233.55252 10.51 46.1 Yes
Cluster-18,233.55256 19.06 245.6 Yes
miR159 ib-miR159c-2 383.48 94.02 Cluster-18,233.73594 3.2 0 Transcription factor GAMYB Yes
ib-miR159c-3 225.57 47.01     No
ib-miR159e 236.85 47.01 Cluster-18,233.73593 7.52 12.52 Yes
miR160 ib-miR160e-5p 22.56 0 Cluster-18,233.46832 698.25 1177.83 Auxin response factor 18 Yes
Cluster-18,233.61692 0 0 Yes
Cluster-18,233.71745 27.45 22 Yes
Cluster-18,233.73056 14 3.79 Yes
Cluster-18,233.9945 13.88 63.65 Yes
miR164 ib-miR164c 0 47.01 Cluster-18,233.42258 590.54 2040.1 NAC domain-containing protein; Homeobox-leucine zipper protein Yes
Cluster-18,233.42259 14.57 1332.45 Yes
Cluster-23,975.1 20.31 6.74 Yes
ib-miR164c-5p 676.72 329.07 Cluster-18,233.42257 1211.17 1972.55 Yes
miR165 ib-miR165a-3p.1 33.83 0 Cluster-18,233.49635 270.23 188.48 Homeobox-leucine zipper protein Yes
ib-miR165a-3p.2 33.83 0 Cluster-18,233.49636 605.46 559.74 Yes
miR166 ib-miR166i-2 33.84 0 Cluster-18,233.52940 207.95 246.36 Homeobox-leucine zipper protein Yes
ib-miR166i-3p 11.28 0 Cluster-18,233.49635 270.23 188.48 Yes
ib-miR166m-2 1116.59 376.09 Cluster-18,233.46250 1171.11 1941.32 No
miR172 ib-miR172a-1 372.2 141.03 Cluster-18,233.34295 4.28 27.89 Ethylene-responsive transcription factor; Probable WRKY transcription factor Yes
ib-miR172b 11.28 0 Cluster-18,233.74211 151.94 101.57 Yes
ib-miR172c 45.11 94.02 Cluster-18,233.74214 26.71 92.68 Yes
ib-miR172c-3p    Cluster-18,233.40075 71.18 114.9 Yes
   Cluster-18,233.65234 80.65 53.88 Yes
ib-miR172e-3p.2 146.62 329.07 Cluster-18,233.45961 39.2 48.52 Yes
22.56 47.01 Cluster-18,233.48871 225.84 279.91 Yes
ib-miR172i 135.34 329.07 Cluster-18,233.74217 0 66.97 Yes
miR319 ib-miR319a-2 6124.34 13,209.99      No
miR396 ib-miR396g-5p.2 33.84 188.04 Cluster-18,233.16052 0 100.39 WD repeat-containing protein Yes
miR858 ib-miR858b 845.9 3948.9 Cluster-18,233.56482 25.72 7.37 Myb-related protein Myb4 Yes
ib-miR858–2 11.28 47.01 Cluster-18,233.2285 180.33 29.79 Yes
miR2111 ib-miR2111-5p 3169.32 11,141.53 Cluster-18,233.65234 80.65 53.88 Ethylene-responsive transcription factor Yes
ib-miR2111a 169.18 517.12 Cluster-18,233.65234 80.65 53.88 Yes
ib-miR2111a-5p 259.41 658.14 Cluster-18,233.65234 80.65 53.88 Yes