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Table 1 Differentially expressed known miRNAs and their targets involved in anthocyanin biosynthesis in sweetpotato

From: Uncovering anthocyanin biosynthesis related microRNAs and their target genes by small RNA and degradome sequencing in tuberous roots of sweetpotato

 

miRNA

Normalized expression

Target transcripts

Normalized expression

Transcripts Annotation

Degradome Detection

XS-18

XZS-3

XS-18

XZS-3

 

ib-miR156a-5p

214.32

441.76

Cluster-18,233.55254

155.92

84.08

 

Yes

miR156

ib-miR156b

11.28

0

Cluster-18,233.20487

238.99

123.33

Squamosa promoter-binding-like protein; Transcription factor GAMYB

Yes

Cluster-18,233.55255

112.25

80.82

Yes

ib-miR156f-5p

11.28

0

Cluster-18,233.20485

239.94

219.41

Yes

Cluster-18,233.20486

108.11

106.18

Yes

Cluster-18,233.55250

133.91

189.22

 

Cluster-18,233.55252

10.51

46.1

Yes

Cluster-18,233.55256

19.06

245.6

Yes

miR159

ib-miR159c-2

383.48

94.02

Cluster-18,233.73594

3.2

0

Transcription factor GAMYB

Yes

ib-miR159c-3

225.57

47.01

   

No

ib-miR159e

236.85

47.01

Cluster-18,233.73593

7.52

12.52

Yes

miR160

ib-miR160e-5p

22.56

0

Cluster-18,233.46832

698.25

1177.83

Auxin response factor 18

Yes

Cluster-18,233.61692

0

0

Yes

Cluster-18,233.71745

27.45

22

Yes

Cluster-18,233.73056

14

3.79

Yes

Cluster-18,233.9945

13.88

63.65

Yes

miR164

ib-miR164c

0

47.01

Cluster-18,233.42258

590.54

2040.1

NAC domain-containing protein; Homeobox-leucine zipper protein

Yes

Cluster-18,233.42259

14.57

1332.45

Yes

Cluster-23,975.1

20.31

6.74

Yes

ib-miR164c-5p

676.72

329.07

Cluster-18,233.42257

1211.17

1972.55

Yes

miR165

ib-miR165a-3p.1

33.83

0

Cluster-18,233.49635

270.23

188.48

Homeobox-leucine zipper protein

Yes

ib-miR165a-3p.2

33.83

0

Cluster-18,233.49636

605.46

559.74

Yes

miR166

ib-miR166i-2

33.84

0

Cluster-18,233.52940

207.95

246.36

Homeobox-leucine zipper protein

Yes

ib-miR166i-3p

11.28

0

Cluster-18,233.49635

270.23

188.48

Yes

ib-miR166m-2

1116.59

376.09

Cluster-18,233.46250

1171.11

1941.32

No

miR172

ib-miR172a-1

372.2

141.03

Cluster-18,233.34295

4.28

27.89

Ethylene-responsive transcription factor; Probable WRKY transcription factor

Yes

ib-miR172b

11.28

0

Cluster-18,233.74211

151.94

101.57

Yes

ib-miR172c

45.11

94.02

Cluster-18,233.74214

26.71

92.68

Yes

ib-miR172c-3p

  

Cluster-18,233.40075

71.18

114.9

Yes

  

Cluster-18,233.65234

80.65

53.88

Yes

ib-miR172e-3p.2

146.62

329.07

Cluster-18,233.45961

39.2

48.52

Yes

22.56

47.01

Cluster-18,233.48871

225.84

279.91

Yes

ib-miR172i

135.34

329.07

Cluster-18,233.74217

0

66.97

Yes

miR319

ib-miR319a-2

6124.34

13,209.99

    

No

miR396

ib-miR396g-5p.2

33.84

188.04

Cluster-18,233.16052

0

100.39

WD repeat-containing protein

Yes

miR858

ib-miR858b

845.9

3948.9

Cluster-18,233.56482

25.72

7.37

Myb-related protein Myb4

Yes

ib-miR858–2

11.28

47.01

Cluster-18,233.2285

180.33

29.79

Yes

miR2111

ib-miR2111-5p

3169.32

11,141.53

Cluster-18,233.65234

80.65

53.88

Ethylene-responsive transcription factor

Yes

ib-miR2111a

169.18

517.12

Cluster-18,233.65234

80.65

53.88

Yes

ib-miR2111a-5p

259.41

658.14

Cluster-18,233.65234

80.65

53.88

Yes